Sample name: H9_PRO-seq_3
Looper stats summary
| sample_name |
H9_PRO-seq_3 |
| sample_desc |
H9 PRO-seq |
| treatment |
DMSO |
| replicate |
3 |
| toggle |
1 |
| protocol |
PRO |
| organism |
human |
| read_type |
PAIRED |
| cell_type |
H9 |
| purpose |
low pause index; differential analysis |
| umi_status |
true_8 |
| umi_length |
8 |
| data_source |
SRA |
| read1 |
/project/shefflab/data/guertin/fastq/H9_DMSO_rep3_PE1.fastq.gz |
| read2 |
/project/shefflab/data/guertin/fastq/H9_DMSO_rep3_PE2.fastq.gz |
| srr |
H9_DMSO_rep3 |
| Sample_title |
H9_DMSO_rep3 |
| Sample_geo_accession |
GSM4214082 |
| Sample_source_name_ch1 |
H9 cells |
| File_mb |
2340.86 |
| Read_type |
paired |
| Genome |
hg38 |
| Raw_reads |
92628962 |
| Fastq_reads |
92628962 |
| Reads_with_adapter |
34725419.0 |
| Uninformative_adapter_reads |
18106301.0 |
| Duplicate_reads |
1862033.0 |
| Pct_uninformative_adapter_reads |
39.0943 |
| Trimmed_reads |
54838340 |
| Trim_loss_rate |
40.8 |
| Peak_adapter_insertion_size |
20 |
| Degradation_ratio |
0.9769 |
| Aligned_reads_human_rDNA |
5405874.0 |
| Alignment_rate_human_rDNA |
9.86 |
| Mapped_reads |
43295089 |
| QC_filtered_reads |
25127415 |
| Aligned_reads |
18167674.5 |
| Alignment_rate |
33.13 |
| Total_efficiency |
19.61 |
| Read_depth |
2.98 |
| Mitochondrial_reads |
711009 |
| Maximum_read_length |
38 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.8825 |
| NRF |
1.0 |
| PBC1 |
9740520.5 |
| PBC2 |
9740520.5 |
| Unmapped_reads |
5843431 |
| TSS_coding_score |
28.6 |
| TSS_non-coding_score |
10.5 |
| Pause_index |
33.89 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
1.28 |
| Time |
3:36:20 |
| Success |
02-27-13:02:22 |
