FastQCFastQC Report
Thu 27 Feb 2020
H9_PRO-seq_1_R2_trimmed.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameH9_PRO-seq_1_R2_trimmed.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31605871
Sequences flagged as poor quality0
Sequence length10-30
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNN7891552.496862054521453No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC5836771.8467360067374823No Hit
CGCGGGCCCAGAAGCGCAGCGACAGCCTC571160.18071326052049No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTT505890.1600620340442445No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN335710.10621760748185044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)