Sample name: K562_RNA-seq_80
Looper stats summary
| sample_name |
K562_RNA-seq_80 |
| sample_desc |
20% K562 PRO-seq + 80% K562 RNA-seq |
| treatment |
none |
| replicate |
1 |
| toggle |
1 |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| cell_type |
K562 |
| purpose |
mRNA contamination; FRiF/PRiF |
| umi_status |
FALSE |
| umi_length |
0 |
| data_source |
SRA |
| read1 |
/project/shefflab/data/guertin/fastq/K562_80pct_RNArc_r2.fastq.gz |
| srr |
K562_80pct_RNArc_r2 |
| Sample_title |
K562 RNA spike-in 80pct RC |
| Sample_geo_accession |
GSM1480327;GSM765405 |
| Sample_source_name_ch1 |
K562 cells |
| File_mb |
784.39 |
| Read_type |
single |
| Genome |
hg38 |
| Raw_reads |
10000000 |
| Fastq_reads |
10000000 |
| Reads_with_adapter |
4521696.0 |
| Uninformative_adapter_reads |
49637.0 |
| Pct_uninformative_adapter_reads |
0.4964 |
| Trimmed_reads |
9950363 |
| Trim_loss_rate |
0.5 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2303 |
| Aligned_reads_human_rDNA |
378416.0 |
| Alignment_rate_human_rDNA |
3.8 |
| Mapped_reads |
8355005 |
| QC_filtered_reads |
1668539 |
| Aligned_reads |
6686466 |
| Alignment_rate |
67.2 |
| Total_efficiency |
66.86 |
| Read_depth |
3.21 |
| Mitochondrial_reads |
519002 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.8 |
| PBC1 |
0.93 |
| PBC2 |
22.13 |
| Unmapped_reads |
1216942 |
| TSS_coding_score |
18.1 |
| TSS_non-coding_score |
3.6 |
| Pause_index |
12.25 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.39 |
| mRNA_contamination |
8.02 |
| Time |
1:03:13 |
| Success |
02-27-10:27:16 |
