Sample name: K562_RNA-seq_30
Looper stats summary
| sample_name |
K562_RNA-seq_30 |
| sample_desc |
70% K562 PRO-seq + 30% K562 RNA-seq |
| treatment |
none |
| replicate |
1 |
| toggle |
1 |
| protocol |
PRO |
| organism |
human |
| read_type |
SINGLE |
| cell_type |
K562 |
| purpose |
mRNA contamination; FRiF/PRiF |
| umi_status |
FALSE |
| umi_length |
0 |
| data_source |
SRA |
| read1 |
/project/shefflab/data/guertin/fastq/K562_30pct_RNArc_r2.fastq.gz |
| srr |
K562_30pct_RNArc_r2 |
| Sample_title |
K562 RNA spike-in 30pct RC |
| Sample_geo_accession |
GSM1480327;GSM765405 |
| Sample_source_name_ch1 |
K562 cells |
| File_mb |
803.62 |
| Read_type |
single |
| Genome |
hg38 |
| Raw_reads |
10000000 |
| Fastq_reads |
10000000 |
| Reads_with_adapter |
7013383.0 |
| Uninformative_adapter_reads |
174726.0 |
| Pct_uninformative_adapter_reads |
1.7473 |
| Trimmed_reads |
9825274 |
| Trim_loss_rate |
1.75 |
| Peak_adapter_insertion_size |
34 |
| Degradation_ratio |
0.2303 |
| Aligned_reads_human_rDNA |
703191.0 |
| Alignment_rate_human_rDNA |
7.16 |
| Mapped_reads |
8597206 |
| QC_filtered_reads |
1214446 |
| Aligned_reads |
7382760 |
| Alignment_rate |
75.14 |
| Total_efficiency |
73.83 |
| Read_depth |
2.15 |
| Mitochondrial_reads |
309258 |
| Maximum_read_length |
100 |
| Genome_size |
3099922541 |
| NRF |
0.93 |
| PBC1 |
0.97 |
| PBC2 |
46.16 |
| Unmapped_reads |
524877 |
| TSS_coding_score |
16.2 |
| TSS_non-coding_score |
5.3 |
| Pause_index |
13.1 |
| Plus_FRiP |
0.37 |
| Minus_FRiP |
0.36 |
| mRNA_contamination |
3.21 |
| Time |
0:57:50 |
| Success |
02-27-10:21:26 |
