Sample name: HEK_PRO-seq
Looper stats summary
| sample_name |
HEK_PRO-seq |
| sample_desc |
HEK w/ osTIR1, ZNF143AID PRO-seq |
| treatment |
Auxin |
| replicate |
1 |
| toggle |
1 |
| protocol |
PRO |
| organism |
human |
| read_type |
PAIRED |
| cell_type |
HEK293T |
| purpose |
very intact RNA |
| umi_status |
true_8 |
| umi_length |
8 |
| data_source |
SRA |
| read1 |
/project/shefflab/data/guertin/fastq/SRR8608074_PE1.fastq.gz |
| read2 |
/project/shefflab/data/guertin/fastq/SRR8608074_PE2.fastq.gz |
| srr |
SRR8608074 |
| srx |
SRX5407488 |
| Sample_title |
HEK_TIR1_ZNF143AID_Auxin_rep4 |
| Sample_geo_accession |
GSM3618147 |
| Sample_source_name_ch1 |
HEK-293T cells |
| Sample_characteristics_ch1 |
cell line: HEK-293T |
| gsm_id |
GSM3618147 |
| File_mb |
1337.94 |
| Read_type |
paired |
| Genome |
hg38 |
| Raw_reads |
51533198 |
| Fastq_reads |
51533198 |
| Reads_with_adapter |
16626152.0 |
| Uninformative_adapter_reads |
5380555.0 |
| Duplicate_reads |
916082.0 |
| Pct_uninformative_adapter_reads |
20.8819 |
| Trimmed_reads |
40207164 |
| Trim_loss_rate |
21.98 |
| Peak_adapter_insertion_size |
37 |
| Degradation_ratio |
0.5783 |
| Aligned_reads_human_rDNA |
4230222.0 |
| Alignment_rate_human_rDNA |
10.52 |
| Mapped_reads |
33104378 |
| QC_filtered_reads |
18769818 |
| Aligned_reads |
14334559.5 |
| Alignment_rate |
35.65 |
| Total_efficiency |
27.82 |
| Read_depth |
2.41 |
| Mitochondrial_reads |
325556 |
| Maximum_read_length |
38 |
| Genome_size |
3099922541 |
| Frac_exp_unique_at_10M |
0.9097 |
| NRF |
1.0 |
| PBC1 |
7591734.5 |
| PBC2 |
7591734.5 |
| Unmapped_reads |
2807990 |
| TSS_coding_score |
16.0 |
| TSS_non-coding_score |
2.4 |
| Pause_index |
14.83 |
| Plus_FRiP |
0.39 |
| Minus_FRiP |
0.37 |
| mRNA_contamination |
1.25 |
| Time |
2:50:30 |
| Success |
02-27-12:15:32 |
