id	filename	cellType	cellTypeSubtype	antibody	mappingGenome	dataSource	dataSourceGSM	description
BG107_A3300007_Gata2	BG107_A3300007_Gata2.bed	Mast	[PC] Mast cell	Gata2	mm10	GSE42518	GSM1041378	Bone marrow cells were cultured in the presence of IL3 and SCF
BG108_A3300008_PU1	BG108_A3300008_PU1.bed	Mast	[PC] Mast cell	Spi1	mm10	GSE48086	GSM1167581	Bone marrow cells were cultured in the presence of IL3 and SCF
BG109_A3300009_Runx1	BG109_A3300009_Runx1.bed	Mast	[PC] Mast cell	Runx1	mm10	GSE48086	GSM1167582	Bone marrow cells were cultured in the presence of IL3 and SCF
BG110_A3300010_Scl	BG110_A3300010_Scl.bed	Mast	[PC] Mast cell	Tal1	mm10	GSE48086	GSM1167583	Bone marrow cells were cultured in the presence of IL3 and SCF
BG122_A420009_Erg	BG122_A420009_Erg.bed	Mast	[PC] Mast cell	Erg	mm10	GSE48086	GSM1167576	Bone marrow cells were cultured in the presence of IL3 and SCF
BG123_A420010_Fli1	BG123_A420010_Fli1.bed	Mast	[PC] Mast cell	Fli1	mm10	GSE48086	GSM1167577	Bone marrow cells were cultured in the presence of IL3 and SCF
BG125_A420012_Lmo2	BG125_A420012_Lmo2.bed	Mast	[PC] Mast cell	Lmo2	mm10	GSE48086	GSM1167579	Bone marrow cells were cultured in the presence of IL3 and SCF
BG126_A420013_Meis1	BG126_A420013_Meis1.bed	Mast	[PC] Mast cell	Meis1	mm10	GSE48086	GSM1167580	Bone marrow cells were cultured in the presence of IL3 and SCF
BG139_A610003_CTCF	BG139_A610003_CTCF.bed	Mast	[PC] Mast cell	Ctcf	mm10	GSE48086	GSM1167574	Bone marrow cells were cultured in the presence of IL3 and SCF
BG140_A610004_E2A	BG140_A610004_E2A.bed	Mast	[PC] Mast cell	Tcf3	mm10	GSE48086	GSM1167575	Bone marrow cells were cultured in the presence of IL3 and SCF
BG145_A730001_Mitf	BG145_A730001_Mitf.bed	Mast	[PC] Mast cell	Mitf	mm10	GSE48086	GSM1167584	Bone marrow cells were cultured in the presence of IL3 and SCF
BG147_A730003_Gfi1	BG147_A730003_Gfi1.bed	Mast	[PC] Mast cell	Gfi1	mm10	GSE42518	GSM1041379	Bone marrow cells were cultured in the presence of IL3 and SCF
BG162_B460002_cFos	BG162_B460002_cFos.bed	Mast	[PC] Mast cell	Fos	mm10	GSE48086	GSM1167585	Bone marrow cells were cultured in the presence of IL3 and SCF
BG26_PU1_HPC7	BG26_PU1_HPC7.bed	Multipotent myeloid progenitor	[CL] HPC-7	Spi1	mm10	GSE22178	GSM552240	N/A
BG43_Lmo2_HPC7	BG43_Lmo2_HPC7.bed	Multipotent myeloid progenitor	[CL] HPC-7	Lmo2	mm10	GSE22178	GSM552237	N/A
BG61_BG61r_Runx1_HP	BG61_BG61r_Runx1_HP.bed	Haematopoietic progenitor	[PCL] VE-cadherin- CD41+ (ES cell derived)	Runx1	mm10	GSE29515	GSM730632	N/A
BG83_5307_3_CTCF	BG83_5307_3_CTCF.bed	Multipotent myeloid progenitor	[CL] HPC-7	Ctcf	mm10	GSE48086	GSM1167572	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
BG87_5307_8_E2A	BG87_5307_8_E2A.bed	Multipotent myeloid progenitor	[CL] HPC-7	Tcf3	mm10	GSE48086	GSM1167573	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
BG98_5684_8_Gfi1b	BG98_5684_8_Gfi1b.bed	Leukemogenic	[CL] J2E Immature Erythroid	Gfi1b	mm10	PMID  22158964	PMID  22158964	E12 FL
c-Myb_GSM912903_MEL	c-Myb_GSM912903_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Myb	mm10	GSE36030	GSM912903	NULL
c-Myc_GSM912934_MEL	c-Myc_GSM912934_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Myc	mm10	GSE36030	GSM912934	NULL
CEBPa_GSM537984_Macrophages	CEBPa_GSM537984_Macrophages.bed	Macrophages	[PC] Peritoneal Macrophage	Cebpa	mm10	GSE21512	GSM537984	Thioglycollate-elicited peritoneal macrophages
CEBPb_GSM537985_Macrophages	CEBPb_GSM537985_Macrophages.bed	Macrophages	[PC] Peritoneal Macrophage	Cebpb	mm10	GSE21512	GSM537985	Thioglycollate-elicited peritoneal macrophages
CEBPb_GSM686970_day0_Adipocytes	CEBPb_GSM686970_day0_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpb	mm10	GSE27826	GSM686970	Day 0 (confluent)
CEBPb_GSM686971_2h_Adipocytes	CEBPb_GSM686971_2h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpb	mm10	GSE27826	GSM686971	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 2 hrs.
CEBPb_GSM686972_4h_Adipocytes	CEBPb_GSM686972_4h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpb	mm10	GSE27826	GSM686972	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 4 hrs.
CEBPb_GSM686973_day2_Adipocytes	CEBPb_GSM686973_day2_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpb	mm10	GSE27826	GSM686973	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 2 days.
CEBPd_GSM686974_day0_Adipocytes	CEBPd_GSM686974_day0_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpd	mm10	GSE27826	GSM686974	Day 0 (confluent)
CEBPd_GSM686975_4h_Adipocytes	CEBPd_GSM686975_4h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Cebpd	mm10	GSE27826	GSM686975	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 4 hrs.
CHD2_GSM912929_MEL	CHD2_GSM912929_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Chd2	mm10	GSE36030	GSM912929	NULL
CTCF_GSM1023416_Rag1-_DN_Thymo	CTCF_GSM1023416_Rag1-_DN_Thymo.bed	T-Cells	[PC] CD4-CD8- (Rag1 KO)	Ctcf	mm10	GSE41743	GSM1023416	CD4-CD8- (DN) thymocytes were obtained from 3-wk-old Rag1-/- mice
CTCF_GSM1023418_Rag1-_DP_Thymo	CTCF_GSM1023418_Rag1-_DP_Thymo.bed	T-Cells	[PC] CD4+CD8+ (Rag1 KO with TCRb transgene)	Ctcf	mm10	GSE41743	GSM1023418	CD4+ CD8+ (DP) thymocytes were obtained from Rag1 -/- with TCRbeta transgene 10 days after a single i.p. injection of anti-CD3 antibody.
CTCF_GSM1023420_Rag1-_Pro_B	CTCF_GSM1023420_Rag1-_Pro_B.bed	B-Cells	[PC] Pro-B-Cells (Rag1 KO)	Ctcf	mm10	GSE41743	GSM1023420	Rag1 -/- pro-B cells
CTCF_GSM535747_Pre-Adipocyte	CTCF_GSM535747_Pre-Adipocyte.bed	Pre-adipocyte	[CL] 3T3-L1 preadipocyte	Ctcf	mm10	GSE20752	GSM535747	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 2 days.
CTCF_GSM912896_MEL	CTCF_GSM912896_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Ctcf	mm10	GSE36030	GSM912896	NULL
Elf1_GSM999184_Treg_T-Cells	Elf1_GSM999184_Treg_T-Cells.bed	T-Cells	[PC] CD4+ Treg	Elf1	mm10	GSE40684	GSM999184	Foxp3+ CD4+ T cells were sorted from spleens and lymph nodes of ~8-wk-old mice.
Elf1_GSM999185_TN_T-Cells	Elf1_GSM999185_TN_T-Cells.bed	T-Cells	[PC] CD4+ (Foxp3 KO)	Elf1	mm10	GSE40684	GSM999185	Foxp3- CD4+ T cells were isolated from spleens and lymph nodes of ~8 wk old mice.
ERX206185_87_Gata_1_Ter119_neg	ERX206185_87_Gata_1_Ter119_neg.bed	Erythroid	[PC] Ter119- Erythroblasts	Gata1	mm10	ERA195911	ERX206185-ERX206187	Fetal liver cells from day E12.5 C57/BL6 mouse embryos expanded for 3 days in serum free medium (Papadopoulos GL. 2013) Ter119-
ERX206186_89_Gata_1_Ter119_pos	ERX206186_89_Gata_1_Ter119_pos.bed	Erythroid	[PC] Ter119+ Erythrocytes	Gata1	mm10	ERA195911	ERX206186-ERX206189	Fetal liver cells from day E12.5 C57/BL6 mouse embryos expanded for 3 days in serum free medium (Papadopoulos GL. 2013) Ter119+
Eto2_ERX002124_MEL	Eto2_ERX002124_MEL.bed	Mouse ErythroLeukaemic	[CL] C88 MEL	Cbfa2t3	mm10	ERA000161	ERX002124	Eto2 non-induced ChIP
Eto2_ERX002126_MEL	Eto2_ERX002126_MEL.bed	Mouse ErythroLeukaemic	[CL] C88 MEL	Cbfa2t3	mm10	ERA000161	ERX002126	Eto2 induced ChIP
Ets1_GSM777093_G1ME_MK-Prog	Ets1_GSM777093_G1ME_MK-Prog.bed	Megakaryocyte Progenitors	[CL] G1ME (Gata1 null)	Ets1	mm10	GSE31331	GSM777093	NULL
Ets1_GSM999186_Treg_T-Cells	Ets1_GSM999186_Treg_T-Cells.bed	T-Cells	[PC] CD4+ Treg 	Ets1	mm10	GSE40684	GSM999186	Foxp3+ CD4+ T cells were isolated from spleens and lymph nodes of ~8 wk old mice.
Ets1_GSM999187_CD4_T-Cells	Ets1_GSM999187_CD4_T-Cells.bed	T-Cells	[PC] CD4+ (Foxp3 KO)	Ets1	mm10	GSE40684	GSM999187	Foxp3- CD4+ T cells were sorted from spleens and lymph nodes of ~8-wk-old mice.
Foxp3_GSM999179_80_82_Treg_T-Cells	Foxp3_GSM999179_80_82_Treg_T-Cells.bed	T-Cells	[PC] CD4+ Treg 	Foxp3	mm10	GSE40684	GSM999179-GSM999180-GSM999182	Foxp3+ CD4+ T cells were sorted from spleens and lymph nodes of ~8-wk-old mice.
Gata1_ERX002128_MEL	Gata1_ERX002128_MEL.bed	Mouse ErythroLeukaemic	[CL] C88 MEL	Gata1	mm10	ERA000161	ERX002128	Gata1 non-induced ChIP
Gata1_ERX002130_MEL	Gata1_ERX002130_MEL.bed	Mouse ErythroLeukaemic	[CL] C88 MEL	Gata1	mm10	ERA000161	ERX002130	Gata1 induced ChIP
Gata1_GSM777092_G1ME_MK-Prog	Gata1_GSM777092_G1ME_MK-Prog.bed	Megakaryocyte Progenitors	[CL] G1ME (Gata1 null); HA-Gata1	Gata1	mm10	GSE31331	GSM777092	ChIPs were performed 48 hours after transduction with HA-GATA1 retrovirus (antibody used HA)
Gata1_GSM912907_MEL	Gata1_GSM912907_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Gata1	mm10	GSE36030	GSM912907	NULL
Gata2_GSM777091_G1ME_MK-Prog	Gata2_GSM777091_G1ME_MK-Prog.bed	Megakaryocyte Progenitors	[CL] G1ME (Gata1 null)	Gata2	mm10	GSE31331	GSM777091	NULL
Gfi1_GSM786037_MLL-ENL-Preleukemia	Gfi1_GSM786037_MLL-ENL-Preleukemia.bed	AML pre-leukaemic	[CL] MLL-ENL	Gfi1	mm10	GSE31657	GSM786037	Immortalized bone marrow progenitor cells WITH MLL-ENL
GR_GSM686976_4h_Adipocytes	GR_GSM686976_4h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Gcgr	mm10	GSE27826	GSM686976	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 4 hrs.
GSM1003593_Kdm2a	GSM1003593_Kdm2a.bed	Embryonic stem cells	[PCL] V6.5 ES cells	Kdm2a	mm10	GSE41267	GSM1003593	N/A
GSM1003594_Kdm2b	GSM1003594_Kdm2b.bed	Embryonic stem cells	[PCL] V6.5 ES cells	Kdm2b	mm10	GSE41267	GSM1003594	N/A
GSM1003596_Rnf2	GSM1003596_Rnf2.bed	Embryonic stem cells	[PCL] E14 ES cells; control knockdown	Rnf2	mm10	GSE41267	GSM1003596	ES cells expressing control shRNA
GSM1003597_Kdm2b	GSM1003597_Kdm2b.bed	Embryonic stem cells	[PCL] E14 ES cells; control knockdown	Kdm2b	mm10	GSE41267	GSM1003597	ES cells expressing control shRNA
GSM1003599_Rnf2	GSM1003599_Rnf2.bed	Embryonic stem cells	[PCL] E14 ES cells; Kdm2b knockdown	Rnf2	mm10	GSE41267	GSM1003599	ES cells expressing shRNA targeting Kdm2b
GSM1003600_Kdm2b	GSM1003600_Kdm2b.bed	Embryonic stem cells	[PCL] E14 ES cells; Kdm2b knockdown	Kdm2b	mm10	GSE41267	GSM1003600	ES cells expressing shRNA targeting Kdm2b
GSM1004784_85_BatF_Th0	GSM1004784_85_BatF_Th0.bed	T-Cells	[PC] Th0	Batf	mm10	GSE40918	GSM1004784-GSM1004785	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hours.
GSM1004786_87_BatF_Th17	GSM1004786_87_BatF_Th17.bed	T-Cells	[PC] Th17	Batf	mm10	GSE40918	GSM1004786-GSM1004787	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004789_91_BatF_Th0	GSM1004789_91_BatF_Th0.bed	T-Cells	[PC] Th0	Batf	mm10	GSE40918	GSM1004789-GSM1004791	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004790_92_BatF_Th0	GSM1004790_92_BatF_Th0.bed	T-Cells	[PC] Th0 (IRF4 KO)	Batf	mm10	GSE40918	GSM1004790-GSM1004792	IRF4 KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004793_BatF_Th17	GSM1004793_BatF_Th17.bed	T-Cells	[PC] Th17	Batf	mm10	GSE40918	GSM1004793	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 16 hrs.
GSM1004794_96_BatF_Th17	GSM1004794_96_BatF_Th17.bed	T-Cells	[PC] Th17	Batf	mm10	GSE40918	GSM1004794-GSM1004796	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004795_97_BatF_Th17	GSM1004795_97_BatF_Th17.bed	T-Cells	[PC] Th17 (IRF4 KO)	Batf	mm10	GSE40918	GSM1004795-GSM1004797	IRF4 KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004799_800_cMaf_Th17	GSM1004799_800_cMaf_Th17.bed	T-Cells	[PC] Th17	Maf	mm10	GSE40918	GSM1004799-GSM1004800	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004802_03_Ctcf_Th0	GSM1004802_03_Ctcf_Th0.bed	T-Cells	[PC] Th0	Ctcf	mm10	GSE40918	GSM1004802-GSM1004803	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004804_05_Ctcf_Th17	GSM1004804_05_Ctcf_Th17.bed	T-Cells	[PC] Th17	Ctcf	mm10	GSE40918	GSM1004804-GSM1004805	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004806_07_Etv6_Th17	GSM1004806_07_Etv6_Th17.bed	T-Cells	[PC] Th17	Etv6	mm10	GSE40918	GSM1004806-GSM1004807	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004808_Fosl2_Th0	GSM1004808_Fosl2_Th0.bed	T-Cells	[PC] Th0	Fosl2	mm10	GSE40918	GSM1004808	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004809_10_Fosl2_Th17	GSM1004809_10_Fosl2_Th17.bed	T-Cells	[PC] Th17	Fosl2	mm10	GSE40918	GSM1004809-GSM1004810	CD4+CD25-CD62L+CD44lo/-naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004819_20_Hif1a_Th17	GSM1004819_20_Hif1a_Th17.bed	T-Cells	[PC] Th17	Hif1a	mm10	GSE40918	GSM1004819-GSM1004820	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004821_Irf4_Th0	GSM1004821_Irf4_Th0.bed	T-Cells	[PC] Th0	Irf4	mm10	GSE40918	GSM1004821	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004822_Irf4_Th0	GSM1004822_Irf4_Th0.bed	T-Cells	[PC] Th0 (Batf KO)	Irf4	mm10	GSE40918	GSM1004822	Batf -/- CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004823_24_Irf4_Th0	GSM1004823_24_Irf4_Th0.bed	T-Cells	[PC] Th0	Irf4	mm10	GSE40918	GSM1004823-GSM1004824	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were culture with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgammad for 48 hrs.
GSM1004825_Irf4_Th0	GSM1004825_Irf4_Th0.bed	T-Cells	[PC] Th0	Irf4	mm10	GSE40918	GSM1004825	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004826_Irf4_Th0	GSM1004826_Irf4_Th0.bed	T-Cells	[PC] Th0 (Baft KO)	Irf4	mm10	GSE40918	GSM1004826	Batf KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004827_Irf4_Th17	GSM1004827_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004827	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 16 hrs.
GSM1004828_Irf4_Th17	GSM1004828_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004828	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 3 hrs.
GSM1004829_Irf4_Th17	GSM1004829_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004829	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004830_Irf4_Th17	GSM1004830_Irf4_Th17.bed	T-Cells	[PC] Th17 (Baft KO)	Irf4	mm10	GSE40918	GSM1004830	Batf -/- CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004831_Irf4_Th17	GSM1004831_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004831	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004833_35_Irf4_Th17	GSM1004833_35_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004833-GSM1004835	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004834_36_Irf4_Th17	GSM1004834_36_Irf4_Th17.bed	T-Cells	[PC] Th17 (RORg KO)	Irf4	mm10	GSE40918	GSM1004834-GSM1004836	RORg KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004837_Irf4_Th17	GSM1004837_Irf4_Th17.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE40918	GSM1004837	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004838_Irf4_Th17	GSM1004838_Irf4_Th17.bed	T-Cells	[PC] Th17 (Baft KO)	Irf4	mm10	GSE40918	GSM1004838	Batf KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004839_Kdm6b_Th17	GSM1004839_Kdm6b_Th17.bed	T-Cells	[PC] Th17	Kdm6b	mm10	GSE40918	GSM1004839	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004840_Kdm6b_Th17	GSM1004840_Kdm6b_Th17.bed	T-Cells	[PC] Th17	Kdm6b	mm10	GSE40918	GSM1004840	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004841_42_p300_Th0	GSM1004841_42_p300_Th0.bed	T-Cells	[PC] Th0	Ep300	mm10	GSE40918	GSM1004841-GSM1004842	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th0 conditions cultures were supplemented with anti-IL4 and anti-IFNgamma for 48 hrs.
GSM1004843_p300_Th17	GSM1004843_p300_Th17.bed	T-Cells	[PC] Th17 (Stat3 WT CD4-Cre)	Ep300	mm10	GSE40918	GSM1004843	Stat3 +/+ CD4-Cre CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004844_p300_Th17	GSM1004844_p300_Th17.bed	T-Cells	[PC] Th17 (Stat3 fl/fl CD4-Cre)	Ep300	mm10	GSE40918	GSM1004844	Stat3 fl/fl CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004845_p300_Th17	GSM1004845_p300_Th17.bed	T-Cells	[PC] Th17	Ep300	mm10	GSE40918	GSM1004845	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004846_p300_Th17	GSM1004846_p300_Th17.bed	T-Cells	[PC] Th17 (Baft KO)	Ep300	mm10	GSE40918	GSM1004846	Batf -/- CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004847_p300_Th17	GSM1004847_p300_Th17.bed	T-Cells	[PC] Th17	Ep300	mm10	GSE40918	GSM1004847	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004848_p300_Th17	GSM1004848_p300_Th17.bed	T-Cells	[PC] Th17 (IRF4 KO)	Ep300	mm10	GSE40918	GSM1004848	IRF4 -/- CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004849_50_p300_Th17	GSM1004849_50_p300_Th17.bed	T-Cells	[PC] Th17	Ep300	mm10	GSE40918	GSM1004849-GSM1004850	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004851_p300_Th17	GSM1004851_p300_Th17.bed	T-Cells	[PC] Th17	Ep300	mm10	GSE40918	GSM1004851	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004852_p300_Th17	GSM1004852_p300_Th17.bed	T-Cells	[PC] Th17 (RORg KO)	Ep300	mm10	GSE40918	GSM1004852	RORg KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004855_56_Rorc_Th17	GSM1004855_56_Rorc_Th17.bed	T-Cells	[PC] Th17	Rorc	mm10	GSE40918	GSM1004855-GSM1004856	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004858_Stat3_Th17	GSM1004858_Stat3_Th17.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE40918	GSM1004858	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 16 hrs.
GSM1004859_Stat3_Th17	GSM1004859_Stat3_Th17.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE40918	GSM1004859	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 3 hrs.
GSM1004860_61_Stat3_Th17	GSM1004860_61_Stat3_Th17.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE40918	GSM1004860-GSM1004861	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004863_65_Stat3_Th17	GSM1004863_65_Stat3_Th17.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE40918	GSM1004863-GSM1004865	CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1004864_66_Stat3_Th17	GSM1004864_66_Stat3_Th17.bed	T-Cells	[PC] Th17 (RORg KO)	Stat3	mm10	GSE40918	GSM1004864-GSM1004866	RORg KO CD4+CD25-CD62L+CD44lo/- naive CD4+ T cells were isolated from spleen and lymph nodes. Naive CD4+ T cells were cultured with anti-CD3epsilon and anti-CD28 for TCR stimulation. For Th17 conditions cultures were supplemented with anti-IL4; anti-IFNgamma; IL-6 and TGFbeta for 48 hrs.
GSM1014542_Ezh2	GSM1014542_Ezh2.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ezh2	mm10	GSE41314	GSM1014542	N/A
GSM1014546_Kdm2b	GSM1014546_Kdm2b.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Kdm2b	mm10	GSE41314	GSM1014546	N/A
GSM1014548_Ring1b	GSM1014548_Ring1b.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ring1b	mm10	GSE41314	GSM1014548	N/A
GSM1014575_Stat5b	GSM1014575_Stat5b.bed	T-Cells	[PC] Th9	Stat5b	mm10	GSE41317	GSM1014575	Naïve CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for two rounds.
GSM1014576_Stat6	GSM1014576_Stat6.bed	T-Cells	[PC] Th9	Stat6	mm10	GSE41317	GSM1014576	Naïve CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for two rounds.
GSM1015512_Gata4	GSM1015512_Gata4.bed	Embryonic Stem Cell	[CL] J1 derived from 129 background	Gata4	mm10	GSE41361	GSM1015512	Parental cell line: J1 derived from 129 background. Genotype/variation: wild type. Cell type: sorted Flk1+ mesoderm progenitor cells (ES-derived). Differentiation day: 4.5. Clone name: J1G4.2. Chip antibody (mixed): GATA4. Chip antibody info: Santa Cruz; sc-1237; lot K1611. Chip antibody info: Santa Cruz; sc-25310; lot J0611. Chip antibody info: BD pharmingen; L97-56; lot 17576
GSM1015513_Gata4	GSM1015513_Gata4.bed	Embryonic Stem Cell	[PC]	Gata4	mm10	GSE41361	GSM1015513	Parental cell line: J1 derived from 129 background. Genotype/variation: Dnmt3a-/-Dnmt3b-/-(DKO). Cell type: sorted Flk1+ mesoderm progenitor cells (ES-derived). Differentiation day: 4.5. Clone name: 16G4.3. Chip antibody (mixed): GATA4. Chip antibody info: Santa Cruz; sc-1237; lot K1611. Chip antibody info: Santa Cruz; sc-25310; lot J0611. Chip antibody info: BD pharmingen; L97-56; lot 17576
GSM1019771_Suz12	GSM1019771_Suz12.bed	Embryonic Stem Cells	[PCL] E14 ES cells	Suz12	mm10	GSE41589	GSM1019771	N/A
GSM1020006_Smc3	GSM1020006_Smc3.bed	Fibroblast	[PC] Embryonic fibroblast	Smc3	mm10	GSE41603	GSM1020006	Wapl+/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1020007_Smc3	GSM1020007_Smc3.bed	Fibroblast	[PC] Embryonic fibroblast; Wapl deleted	Smc3	mm10	GSE41603	GSM1020007	Wapl -/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1020008_Smc3	GSM1020008_Smc3.bed	Fibroblast	[PC] Embryonic fibroblast	Smc3	mm10	GSE41603	GSM1020008	Wapl+/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1020009_Smc3	GSM1020009_Smc3.bed	Fibroblast	[PC] Embryonic fibroblast; Wapl deleted	Smc3	mm10	GSE41603	GSM1020009	Wapl -/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1020012_Ctcf	GSM1020012_Ctcf.bed	Fibroblast	[PC] Embryonic fibroblast	Ctcf	mm10	GSE41603	GSM1020012	Wapl+/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1020013_Ctcf	GSM1020013_Ctcf.bed	Fibroblast	[PC] Embryonic fibroblast	Ctcf	mm10	GSE41603	GSM1020013	Wapl -/fl MEFs; serum starved and 4-OHT added to delete floxed allele
GSM1027476_Cebpb	GSM1027476_Cebpb.bed	Osteoblast precursor	[CL] MC3T3-E1 cells	Cebpb	mm10	GSE41920	GSM1027476	Cells were cultured in alpha MEM with heat-inactivated fetal bovine serum and penicillin-streptomycin.
GSM1027478_Runx2	GSM1027478_Runx2.bed	Osteoblast precursor	[CL] MC3T3-E1 cells	Runx2	mm10	GSE41920	GSM1027478	Cells were cultured in alpha MEM with heat-inactivated fetal bovine serum and penicillin-streptomycin.
GSM1027494_Cebpb	GSM1027494_Cebpb.bed	Osteoblast	[CL] MC3T3-E1; glycerol-2-phosphate and ascorbic acid treated 	Cebpb	mm10	GSE41920	GSM1027494	Cells were differentiated in complete media plus glycerol-2-phosphate and ascorbic acid for 15 days.
GSM1031977_Sfpi1	GSM1031977_Sfpi1.bed	Myeloid progenitor cells	[CL] Tot2 (Irf8 KO)	Spi1	mm10	GSE38824	GSM1031977	Tot2 cells were retrovirally transduced with MSCV-IRF8. 3 days after the transduction; the cells were harvested.
GSM1038263_Med1	GSM1038263_Med1.bed	B-Cells	[CL] 38B9 Pro-B cells	Med1	mm10	GSE44288	GSM1038263	NULL
GSM1040573_4_Ikzf1	GSM1040573_4_Ikzf1.bed	B-Cells	[PC] Pre-B-Cells	Ikzf1	mm10	GSE38200	GSM1040573-GSM1040574	Primary pre-B cells were established from fetal liver cells plated on irradiated S17 stromal cells and grown in the presence of IL-7.
GSM1041372_Ring1B	GSM1041372_Ring1B.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ring1B	mm10	GSE42466	GSM1041372	N/A
GSM1041373_Cbx7	GSM1041373_Cbx7.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Cbx7	mm10	GSE42466	GSM1041373	N/A
GSM1041374_Suz12	GSM1041374_Suz12.bed	Embryonic Stem cell	[PCL] E14 ES cells	Suz12	mm10	GSE42466	GSM1041374	N/A
GSM1050288_Sox2	GSM1050288_Sox2.bed	neural progenitor cells	[PC] ES cell derived neural progenitors	Sox2	mm10	GSE35496	GSM1050288	ES cells differentiated in vitro
GSM1050289_Sox2	GSM1050289_Sox2.bed	neural progenitor cells	[PC] ES cell derived neural progenitors	Sox2	mm10	GSE35496	GSM1050289	ES cells differentiated in vitro
GSM1050291_Sox2	GSM1050291_Sox2.bed	Embryonic stem cells	[PCL]	Sox2	mm10	GSE35496	GSM1050291	N/A
GSM1050295_Sox2	GSM1050295_Sox2.bed	Embryonic stem cells	[PC] ES cells differentiating to neural progenitors	Sox2	mm10	GSE35496	GSM1050295	ES cells differentiated in vitro for 2 days; Brn2 expression induced using Tet-ON system
GSM1050298_Sox2	GSM1050298_Sox2.bed	Embryonic stem cells	[PC] ES cells differentiating to neural progenitors	Sox2	mm10	GSE35496	GSM1050298	ES cells differentiated in vitro for 2 days; Brn2 expression induced using Tet-ON system
GSM1050301_Sox2	GSM1050301_Sox2.bed	Embryonic stem cells	[PC] ES cells differentiating to neural progenitors	Sox2	mm10	GSE35496	GSM1050301	ES cells differentiated in vitro for 2 days; Brn2 expression induced using Tet-ON system
GSM1050304_Sox2	GSM1050304_Sox2.bed	Embryonic stem cells	[PC] ES cells differentiating to neural progenitors	Sox2	mm10	GSE35496	GSM1050304	ES cells differentiated in vitro for 2 days
GSM1055553_Ldb1	GSM1055553_Ldb1.bed	Mesoderm	[CL] Flk1 + blast colony-forming cells (BL-CFCs)	Ldb1	mm10	GSE43044	GSM1055553	Flk1+ BL-CFCs isolated from day 4 embryoid bodies (grown without LIF)
GSM1058995_Kdm4b	GSM1058995_Kdm4b.bed	Embryonic Stem Cell	[PCL]	Kdm4b	mm10	GSE43231	GSM1058995	ES cells expressing Biotin-Kdm4b. Streptavidin antibody used.
GSM1058996_Kdm4c	GSM1058996_Kdm4c.bed	Embryonic Stem Cell	[PCL]	Kdm4c	mm10	GSE43231	GSM1058996	ES cells expressing Biotin-Kdm4c. Streptavidin antibody used.
GSM1059004_Ezh2	GSM1059004_Ezh2.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Ezh2	mm10	GSE43231	GSM1059004	ES cells expressing control shRNA targeting GFP
GSM1059011_Nanog	GSM1059011_Nanog.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Nanog	mm10	GSE43231	GSM1059011	ES cells expressing control shRNA targeting GFP
GSM1059012_Pou5f1	GSM1059012_Pou5f1.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Pou5f1	mm10	GSE43231	GSM1059012	ES cells expressing control shRNA targeting GFP
GSM1059013_Polr2a	GSM1059013_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Polr2a	mm10	GSE43231	GSM1059013	ES cells expressing control shRNA targeting GFP
GSM1059014_Polr2a	GSM1059014_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Polr2a	mm10	GSE43231	GSM1059014	ES cells expressing control shRNA targeting GFP
GSM1059015_Polr2a	GSM1059015_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Polr2a	mm10	GSE43231	GSM1059015	ES cells expressing control shRNA targeting GFP
GSM1059016_Spt5	GSM1059016_Spt5.bed	Embryonic Stem Cell	[PCL] ES cells; control knockdown	Supt5h	mm10	GSE43231	GSM1059016	ES cells expressing control shRNA targeting GFP
GSM1059024_Pou5f1	GSM1059024_Pou5f1.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4b knockdown	Pou5f1	mm10	GSE43231	GSM1059024	ES cells expressing shRNA targeting Kdm4b
GSM1059025_Ctr9	GSM1059025_Ctr9.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Ctr9	mm10	GSE43231	GSM1059025	ES cells expressing shRNA targeting Kdm4c
GSM1059031_Pou5f1	GSM1059031_Pou5f1.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Pou5f1	mm10	GSE43231	GSM1059033	ES cells expressing shRNA targeting Kdm4c
GSM1059032_Nanog	GSM1059032_Nanog.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Nanog	mm10	GSE43231	GSM1059032	ES cells expressing shRNA targeting Kdm4c
GSM1059034_Polr2a	GSM1059034_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Polr2a	mm10	GSE43231	GSM1059034	ES cells expressing shRNA targeting Kdm4c
GSM1059035_Polr2a	GSM1059035_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Polr2a	mm10	GSE43231	GSM1059035	ES cells expressing shRNA targeting Kdm4c
GSM1059036_Polr2a	GSM1059036_Polr2a.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Polr2a	mm10	GSE43231	GSM1059036	ES cells expressing shRNA targeting Kdm4c
GSM1059037_Spt5	GSM1059037_Spt5.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4c knockdown	Supt5h	mm10	GSE43231	GSM1059037	ES cells expressing shRNA targeting Kdm4c
GSM1065517_bCatenin	GSM1065517_bCatenin.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; CHIR99021 treated	Ctnnb1	mm10	GSE43565	GSM1065517	ES cell carrying knocked-in Biotin-3xFLAG tagged Ctnnb1 (Beta-Catenin) Cells treated for 16 hours with CHIR99021. Anti-FLAG antibody used.
GSM1065518_bCatenin	GSM1065518_bCatenin.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; CHIR99021 treated	Ctnnb1	mm10	GSE43565	GSM1065518	ES cell carrying knocked-in Biotin-3xFLAG tagged Ctnnb1 (Beta-Catenin) Cells treated for 16 hours with CHIR99021. Streptavidin antibody used.
GSM1082340_Pou5f1	GSM1082340_Pou5f1.bed	Embryonic stem cells	[CL] C57BL/6-129	Pou5f1	mm10	GSE44286	GSM1082340	V6.5 (C57BL/6-129) murine ES cells were grown under typical ES conditions on irradiated mouse embryonic fibroblasts (MEFs). For location analysis; cells were grown for two passages off of MEFs; on gelatinized tissue-culture plates.
GSM1082341_Sox2	GSM1082341_Sox2.bed	Embryonic stem cells	[CL] C57BL/6-129	Sox2	mm10	GSE44286	GSM1082341	V6.5 (C57BL/6-129) murine ES cells were grown under typical ES conditions on irradiated mouse embryonic fibroblasts (MEFs). For location analysis; cells were grown for two passages off of MEFs; on gelatinized tissue-culture plates.
GSM1082342_Nanog	GSM1082342_Nanog.bed	Embryonic stem cells	[CL] C57BL/6-129	Nanog	mm10	GSE44286	GSM1082342	V6.5 (C57BL/6-129) murine ES cells were grown under typical ES conditions on irradiated mouse embryonic fibroblasts (MEFs). For location analysis; cells were grown for two passages off of MEFs; on gelatinized tissue-culture plates.
GSM1082346_Cdk8	GSM1082346_Cdk8.bed	Embryonic stem cells	[CL] C57BL/6-129	Cdk8	mm10	GSE44286	GSM1082346	V6.5 (C57BL/6-129) murine ES cells were grown under typical ES conditions on irradiated mouse embryonic fibroblasts (MEFs). For location analysis; cells were grown for two passages off of MEFs; on gelatinized tissue-culture plates.
GSM1082347_Cdk9	GSM1082347_Cdk9.bed	Embryonic stem cells	[CL] C57BL/6-129	Cdk9	mm10	GSE44286	GSM1082347	V6.5 (C57BL/6-129) murine ES cells were grown under typical ES conditions on irradiated mouse embryonic fibroblasts (MEFs). For location analysis; cells were grown for two passages off of MEFs; on gelatinized tissue-culture plates.
GSM1088169_Ctcf	GSM1088169_Ctcf.bed	B-Cells	[PC] B cell enriched splenocytes	CTCF	mm10	GSE44637	GSM1088169	Chip antibody: CTCF. Chip antibody manufacturer: Millipore. Cell type: splenic B cells. Strain: C57BL/6. Cell surface markers: CD43-. Cell isolation: B cells were purified from the spleens of 6-week old mice using a magnetic bead based CD43- B cell Isolation Kit (Miltenyi).
GSM1088171_Ctcf	GSM1088171_Ctcf.bed	Plasmablasts	[PC] Splenic Plasmablasts	CTCF	mm10	GSE44637	GSM1088171	Chip antibody: CTCF. Chip antibody manufacturer: Millipore. Cell type: splenic Plasmablasts.Strain: C57BL/6. Cell surface markers: CD138+. Cell isolation: Plasmablasts were induced by injecting 6-week old mice with 50 ug LPS retro-orbitally. 3 days post-injection spleens were harvested and plasmablasts purified by flow cytometry based on surface expression of CD138.
GSM1090228_Tbx3	GSM1090228_Tbx3.bed	Embryonic stem cells	[PCL]	Tbx3	mm10	GSE44764	GSM1090228	N/A
GSM1090229_Tbx3	GSM1090229_Tbx3.bed	Embryoid bodies	[PC] ES cell derived EBs	Tbx3	mm10	GSE44764	GSM1090229	ES cells differentiated in vitro into embryoid bodies
GSM1090230_Nanog	GSM1090230_Nanog.bed	Embryonic stem cells	[PCL]	Nanog	mm10	GSE44764	GSM1090230	N/A
GSM1090231_Nanog	GSM1090231_Nanog.bed	Embryoid bodies	[PC] ES cell derived EBs	Nanog	mm10	GSE44764	GSM1090231	ES cells differentiated in vitro into embryoid bodies
GSM1103355_Runx1	GSM1103355_Runx1.bed	Megakaryocyte	[PC] Megakaryocytes	Runx1	mm10	GSE45372	GSM1103355	FL cells were derived from E14.5 embryos and cultured in DMEM supplemented with FBS and TPO; and in the presence of 10% CO2. After 7 days in culture; mature MKs were isolated by two sequential 2%-4% BSA gradients.
GSM1103356_Ep300	GSM1103356_Ep300.bed	Megakaryocyte	[PC] Megakaryocytes	Ep300	mm10	GSE45372	GSM1103356	FL cells were derived from E14.5 embryos and cultured in DMEM supplemented with FBS and TPO; and in the presence of 10% CO2. After 7 days in culture; mature MKs were isolated by two sequential 2%-4% BSA gradients.
GSM1131775_Foxo1	GSM1131775_Foxo1.bed	T-Cells	[PC] CD4+	Foxo1	mm10	GSE46525	GSM1131775	cell type: CD4+; genetic background: C57bl/6
GSM1132365_Erg	GSM1132365_Erg.bed	Leukaemia	[PC] AML (MEP type)	Erg	mm10	GSE46554	GSM1132365	Spleens from two mice overexpressing Erg (TgErg 70960) with AML.
GSM1132367_Erg	GSM1132367_Erg.bed	Leukaemia	[PC] AML (MEP type)	Erg	mm10	GSE46554	GSM1132367	Spleens from two mice overexpressing Erg (TgErg 655 Gata1s) with AML.
GSM1133644_Hnf1a	GSM1133644_Hnf1a.bed	T-Cells	[PC] Thymocyte	Hnf1a	mm10	GSE46662	GSM1133644	Thymocytes were collected from a thymus of a 4 wk old mouse.
GSM1142809_10_Cebpa	GSM1142809_10_Cebpa.bed	Hematopoietic Progenitor Cells	[PC] GMP (Cebpa flox/flox)	Cebpa	mm10	GSE47003	GSM1142809-GSM1142810	GMPs (Lin? Sca1? Kit+ CD150? CD41? Fc?RII/III+)
GSM1150325_Ptf1a	GSM1150325_Ptf1a.bed	Pancreas Cells	[PC] Embyronic Pancreas	Ptf1a	mm10	GSE47459	GSM1150325-GSM1150326	Pancreas dissected from E17.5 embryo
GSM1150327_Rbpj	GSM1150327_Rbpj.bed	Neural Tube Cells	[PC] Embryonic Neural Tube	Rbpj	mm10	GSE47459	GSM1150327	Neural turbe dissected from E12.5 embryo
GSM1150328_Rbpj	GSM1150328_Rbpj.bed	Neural Tube Cells	[PC] Embryonic Neural Tube	Rbpj	mm10	GSE47459	GSM1150328	Neural turbe dissected from E12.5 embryo
GSM1150329_Rbpjl	GSM1150329_Rbpjl.bed	Pancreas Cells	[PC] Embyronic Pancreas	Rbpjl	mm10	GSE47459	GSM1150329-GSM1150330	Pancreas dissected from E17.5 embryo
GSM1150333_Foxa2	GSM1150333_Foxa2.bed	Pancreas Cells	[PC] Embyronic Pancreas	Foxa2	mm10	GSE47459	GSM1150333-GSM1150335	Pancreas dissected from E17.5 embryo
GSM1151145_Ctcf	GSM1151145_Ctcf.bed	Erythroid	[PC] Ter119+ Erythrocytes	Ctcf	mm10	GSE47492	GSM1151145	Mouse primary erythroid cells were sorted from the spleens of acetylphenylhydrazine-treated mice based on the expression of Ter119
GSM1151146_Gata1	GSM1151146_Gata1.bed	Erythroid	[PC] Ter119+ Erythrocytes	Gata1	mm10	GSE47492	GSM1151146	Mouse primary erythroid cells were sorted from the spleens of acetylphenylhydrazine-treated mice based on the expression of Ter119
GSM1151147_Nfe2	GSM1151147_Nfe2.bed	Erythroid	[PC] Ter119+ Erythrocytes	Nfe2	mm10	GSE47492	GSM1151147	Mouse primary erythroid cells were sorted from the spleens of acetylphenylhydrazine-treated mice based on the expression of Ter119
GSM1151623_Maf	GSM1151623_Maf.bed	T-Cells	[PC] CD4+	Maf	mm10	GSE47528	GSM1151623	Cell type: Activated CD4+ T cells skewed towards a Th17 subset. Strain: C57BL/6. Genotype: miR-155WT. Chip antibody: c-Maf (Santa Cruz; M-153). Chip antibody manufacturer: Santa Cruz. Chip antibody catalog #: M-153
GSM1165493_Klf1	GSM1165493_Klf1.bed	Erythroid	[PC] Erythroblast	Klf1	mm10	GSE48020	GSM1165493	Erythroblasts (Ter119+CD71+) were sorted from FL of E13.5 HA-Klf1 mice.
GSM1169006_Jarid2	GSM1169006_Jarid2.bed	Embryonic stem cell	[PCL]	Jarid2	mm10	GSE48122	GSM1169006	N/A
GSM1169007_Jarid2	GSM1169007_Jarid2.bed	Embryonic stem cell	[PCL] REST KO ES cells	Jarid2	mm10	GSE48122	GSM1169007	N/A
GSM1169010_Rest	GSM1169010_Rest.bed	Embryonic stem cell	[PCL]	Rest	mm10	GSE48122	GSM1169010	N/A
GSM1169014_Rnf2	GSM1169014_Rnf2.bed	Embryonic stem cell	[PCL]	Rnf2	mm10	GSE48122	GSM1169014	N/A
GSM1169017_Rnf2	GSM1169017_Rnf2.bed	Embryonic stem cell	[PCL] REST KO ES cells	Rnf2	mm10	GSE48122	GSM1169017	N/A
GSM1169018_Suz12	GSM1169018_Suz12.bed	Embryonic stem cell	[PCL]	Suz12	mm10	GSE48122	GSM1169018	N/A
GSM1169019_Suz12	GSM1169019_Suz12.bed	Embryonic stem cell	[PCL] REST KO ES cells	Suz12	mm10	GSE48122	GSM1169019	N/A
GSM1181851_Runx3	GSM1181851_Runx3.bed	T-Cells	[CL] Splenic CD4+ dendritic cells	Runx3	mm10	GSE48591	GSM1181851	Splenic CD4+ dendritic cells collected from approximately 15 mice. DC were freshly sorted; fixed and frozen -80C (Runx3poly clonal home made).
GSM1181852_Runx3	GSM1181852_Runx3.bed	T-Cells	[CL] Splenic CD4+ dendritic cells	Runx3	mm10	GSE48591	GSM1181852	Splenic CD4+ dendritic cells collected from approximately 15 mice. DC were freshly sorted; fixed and frozen -80C (Runx3poly clonal home made).
GSM1183968_Spi1	GSM1183968_Spi1.bed	Macrophages	[PC] Peritoneal Macrophage	Spi1	mm10	GSE48759	GSM1183968	Thioglycollate-elicited peritoneal macrophages - no treatment
GSM1183969_Spi1	GSM1183969_Spi1.bed	Macrophages	[PC] Peritoneal Macrophage; Kdo2 Lipid A treated	Spi1	mm10	GSE48759	GSM1183969	Thioglycollate-elicited peritoneal macrophages treated with Kdo2 Lipid A for 1hr
GSM1183972_Spi1	GSM1183972_Spi1.bed	Macrophages	[PC] Peritoneal Macrophage; Kdo2 Lipid A treated	Spi1	mm10	GSE48759	GSM1183972	Thioglycollate-elicited peritoneal macrophages treated with Kdo2 Lipid A for 24hrs
GSM1183977_Rela	GSM1183977_Rela.bed	Macrophages	[PC] Peritoneal Macrophage	Rela	mm10	GSE48759	GSM1183977	Thioglycollate-elicited peritoneal macrophages - no treatment - group-2
GSM1183978_Rela	GSM1183978_Rela.bed	Macrophages	[PC] Peritoneal Macrophage; Kdo2 Lipid A treated	Rela	mm10	GSE48759	GSM1183978	Thioglycollate-elicited peritoneal macrophages treated with Kdo2 Lipid A for 1hr - group-2
GSM1184045_Nanog	GSM1184045_Nanog.bed	Embryonic Stem Cell	[PCL] ES cells; Kdm4b knockdown	Nanog	mm10	GSE43231	GSM1184045	ES cells expressing shRNA targeting Kdm4b
GSM1198167_Egr2	GSM1198167_Egr2.bed	T-Cells	[PC] Naive CD4	Egr2	mm10	GSE49366	GSM1198167	Naive CD4+ T cells (spleen and lymph nodes) were purified from 6 week old mice using a CD4+CD62+ T cell Isolation Kit. Cells were activated with anti-CD3 and anti-CD28 for 16 hours.
GSM1199182_Ezh2	GSM1199182_Ezh2.bed	Embryonic Stem Cell	[CL] E14	Ezh2	mm10	GSE49435	GSM1199182-GSM1199183	Cells were lysed in ChIP buffer (50 mM Tris-HCl pH 7.9; 150 mM NaCl; 1% Triron X-100; 0.5% NP-40; 5 mM EDTA pH 8.0; 1 mM PMSF and protease inhibitor) and chromatin was sonicated to ~200 bp with a Diagenode Bioruptor Libraries were prepared according to manufacturer’s instructions (Illumina). Immunoprecipitated DNA was first end-repaired using End-It Repair Kit (Epicenter); tailed with an A using Klenow exo minus (NEB M0212); and ligated to custom adapters with LigaFast (Promega; city; state #M8225). Fragments of 300±50 bp were size-selected and subjected to ligation-mediated PCR amplification (LM-PCR); using Phusion DNA polymerase (NEB M0530).
GSM1199188_Suz12	GSM1199188_Suz12.bed	Embryonic Stem Cell	[CL] E14	Suz12	mm10	GSE49435	GSM1199188-GSM1199189	Cells were lysed in ChIP buffer (50 mM Tris-HCl pH 7.9; 150 mM NaCl; 1% Triron X-100; 0.5% NP-40; 5 mM EDTA pH 8.0; 1 mM PMSF and protease inhibitor) and chromatin was sonicated to ~200 bp with a Diagenode Bioruptor Libraries were prepared according to manufacturer’s instructions (Illumina). Immunoprecipitated DNA was first end-repaired using End-It Repair Kit (Epicenter); tailed with an A using Klenow exo minus (NEB M0212); and ligated to custom adapters with LigaFast (Promega; city; state #M8225). Fragments of 300±50 bp were size-selected and subjected to ligation-mediated PCR amplification (LM-PCR); using Phusion DNA polymerase (NEB M0530).
GSM1214529_Runx3	GSM1214529_Runx3.bed	NK cells	[PC] Splenic NK cells	Runx3	mm10	GSE50131	GSM1214529	Mice were injected with mIL-15 and rmIL-15Ra. Two injections were given 48 hrs apart and mice were sacrificed 48 hrs after the second injection. NK cells from spleens of WT mice were sorted and cultured for 7 days in RPMI medium containing FCS; nonessential amino acids; and rhIL-2 or rmIL-15. After 7-day culture period; all cells were NKp46+.
GSM1214531_Runx3	GSM1214531_Runx3.bed	NK cells	[PC] Splenic NK cells	Runx3	mm10	GSE50131	GSM1214531	NK cells from spleens of WT mice were sorted and cultured for 7 days in RPMI medium containing FCS; nonessential amino acids; and rhIL-2 or rmIL-15. After 7-day culture period; all cells were NKp46+. 
GSM1214534_5_Runx3	GSM1214534_5_Runx3.bed	T-Cells	[PC] Splenic T cells CD8+	Runx3	mm10	GSE50131	GSM1214534-GSM1214535	Splenic CD8+ T cells were TCR-activated for 2 days on anti-CD3e coated plates with soluble anti-CD28 and then cultured for 4 additional days in the presence of rhIL-2.
GSM1214539_40_Runx3	GSM1214539_40_Runx3.bed	NK cells	[PC] Splenic NK cells	Runx3	mm10	GSE50131	GSM1214539-GSM1214540	Splenic CD8+ T cells were TCR-activated for 2 days on anti-CD3e coated plates with soluble anti-CD28 and then cultured for 4 additional days in the presence of rhIL-2.
GSM1214544_6_Runx3	GSM1214544_6_Runx3.bed	T-Cells	[PC] Splenic T cells CD8+	Runx3	mm10	GSE50131	GSM1214544-GSM1214545-GSM1214546	Splenic CD8+ T cells were collected from 18 mice.
GSM1214546_Runx3	GSM1214546_Runx3.bed	T-Cells	[CL] Splenic CD8+ T cells	Runx3	mm10	GSE50131	GSM1214546	Splenic NK cells. Cells were freshly isolated; fixed and frozen at -80C (Runx3 poly clonal home made).
GSM1215218_Ezh2	GSM1215218_Ezh2.bed	Embryonic Stem Cell	[PCL]	Ezh2	mm10	GSE46545	GSM1215218	C57BL/6-CBA ES cells
GSM1223648_Cebpa	GSM1223648_Cebpa.bed	Macrophage	[PC] Bone marrow derived macrophages	Cebpa	mm10	GSE50565	GSM1223648	Macrophages differentiated from isolated bone marrow cells in IMDM medium supplemented with IL-3 and CSF1
GSM1229967_Gfi1	GSM1229967_Gfi1.bed	Lymphoid cells	[PC] Innate type-2 lymphocytes	Gfi1	mm10	GSE50806	GSM1229967	Type 2 innate lymphoid cells were sorted from mesenteric lymph nodes of IL-25-treated mice then cultured for 6 days in RPMI-1640 containing FBS; rhIL-2; rmIL-7; rmIL-33 and rmIL-25.
GSM1234366_Stat5b	GSM1234366_Stat5b.bed	T-Cells	[PC] Th9	Stat5b	mm10	GSE41317	GSM1234366	Naïve CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for the 16 hours.
GSM1234369_Stat5b	GSM1234369_Stat5b.bed	T-Cells	[PC] Th9	Stat5b	mm10	GSE41317	GSM1234369	Naïve CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for the 72 hours.
GSM1234370_Stat5b	GSM1234370_Stat5b.bed	T-Cells	[PC] Th9	Stat5b	mm10	GSE41317	GSM1234370	Naive CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for the 72 hours. In the presence of anti-IL-2 antibody.
GSM1234371_Stat6	GSM1234371_Stat6.bed	T-Cells	[PC] Th9	Stat6	mm10	GSE41317	GSM1234371	Naïve CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for the 72 hours.
GSM1234372_Stat6	GSM1234372_Stat6.bed	T-Cells	[PC] Th9	Stat6	mm10	GSE41317	GSM1234372	Naive CD4+ T cells (spleen) were cultured under Th9 conditions (anti-IFNg; IL-4; TGF-beta; anti-CD3; and anti-CD28) for the 72 hours. In the presence of anti-IL-2 antibody. In the presence of anti-IL-2 antibody.
GSM1246866_Crebbp	GSM1246866_Crebbp.bed	Embryonic stem cells	[PCL] V6.5 ES cells	Crebbp	mm10	GSE51522	GSM1246866	N/A
GSM1246868_Thap11	GSM1246868_Thap11.bed	Embryonic stem cells	[PCL] V6.5 ES cells	Thap11	mm10	GSE51522	GSM1246868	N/A
GSM1262345_Brd4	GSM1262345_Brd4.bed	Leukaemia	[CL] MLL-AF9/NrasG12D AML	Brd4	mm10	GSE52279	GSM1262345	Cell line: MLL-AF9/NrasG12D AML cell line. Treatment: DMSO. Chip antibody: anti-Brd4 (Bethyl; A301-985A; A301-985A-1)
GSM1264230_Cebpa	GSM1264230_Cebpa.bed	B-Cells	[PC] Pre-Pro-B-Cells	Cebpa	mm10	GSE52397	GSM1264230	Bcells_18hEstradiol_ChIPseq_Cebpa
GSM1276938_Ascl2	GSM1276938_Ascl2.bed	T-Cells	[PC] CD4+	Ascl2	mm10	GSE52840	GSM1276938	Strain: C57BL/6. Cell type: CD4+ T cells. Genotype/variation: Ascl2 vector transfected. Chip antibody: Ascl2 mAb (clone; 7E2; Millipore; lot# 2066321)
GSM1285796_Hnf1a	GSM1285796_Hnf1a.bed	T-Cells	[PC] Thymocyte	Hnf1a	mm10	GSE46662	GSM1285796	Strain: C57BL/6. Genotype: CD4Cre;CtnnbdEx3fl/fl ('CAT'). Age: 4-6 weeks. Antibody: Tcf1. Antibody provider: antiserum provided by Dr. Kawamoto
GSM1288391_Spi1	GSM1288391_Spi1.bed	Dendritic	[PC] Dendritic; LPS treated	Spi1	mm10	GSE52773	GSM1288391	Bone marrow-derived dendritic cells were stimulated with LPS for 6 hours.
GSM1288392_Batf	GSM1288392_Batf.bed	Dendritic	[PC] Dendritic; LPS treated	Batf	mm10	GSE52773	GSM1288392	Bone marrow-derived dendritic cells were stimulated with LPS for 6 hours.
GSM1288393_Junb	GSM1288393_Junb.bed	Dendritic	[PC] Dendritic; LPS treated	Junb	mm10	GSE52773	GSM1288393	Bone marrow-derived dendritic cells were stimulated with LPS for 6 hours.
GSM1289235_Irf8	GSM1289235_Irf8.bed	Dendritic	[PC] Dendritic (Irf8+/+ Batf3+/+)	Irf8	mm10	GSE53311	GSM1289235	Bone marrow cells were collected; red blood cells lysed and the whole bone marrow was cultured in Flt3 ligand for 10 days.
GSM1289237_Irf8	GSM1289237_Irf8.bed	Dendritic	[PC] Dendritic (Irf8+/+ Batf3-/-)	Irf8	mm10	GSE53311	GSM1289237	Bone marrow cells were collected; red blood cells lysed and the whole bone marrow was cultured in Flt3 ligand for 10 days.
GSM1301741_Men1	GSM1301741_Men1.bed	T-Cells	[PC] KJ1+ naive CD4	Men1	mm10	GSE53831	GSM1301741	Strain background: BALB/c. Genotype/variation: DO11.10 OVA-specific TCR transgenic. Tissue: spleen. Cell type: KJ1+ naive CD4 T cells. Chip antibody: Menin. Chip antibody vendor: Bethyl Laboratories. Chip antibody cat. #: A300-105A. Chip antibody lot#: A300-105A-5
GSM1301742_Men1	GSM1301742_Men1.bed	T-Cells	[PC]  KJ1+ transferred CD4	Men1	mm10	GSE53831	GSM1301742	Strain background: BALB/c. Genotype/variation: DO11.10 OVA-specific TCR transgenic. Tissue: spleen. Cell type: KJ1+ transferred CD4 T cells. Chip antibody: Menin. Chip antibody vendor: Bethyl Laboratories. Chip antibody cat. #: A300-105A. Chip antibody lot#: A300-105A-5
GSM1309509_10_Batf	GSM1309509_10_Batf.bed	T-Cells	[PC] Effector CD8+ (P14 TCR)	Batf	mm10	GSE54191	GSM1309509-GSM1309510	Primary P14 TCR transgenic CD8+ T cells were isolated. Naive CD8+ T cells were stimulated with plate-bound anti-CD3 and anti-CD28 in the presence of rhIL-2 for 3 days.
GSM1309511_2_Irf4	GSM1309511_2_Irf4.bed	T-Cells	[PC] Effector CD8+ (P14 TCR)	Irf4	mm10	GSE54191	GSM1309511-GSM1309512	Primary P14 TCR transgenic CD8+ T cells were isolated. Naive CD8+ T cells were stimulated with plate-bound anti-CD3 and anti-CD28 in the presence of rhIL-2 for 3 days.
GSM1309513_cJun	GSM1309513_cJun.bed	T-Cells	[PC] Effector CD8+ (P14 TCR)	Jun	mm10	GSE54191	GSM1309513	Primary P14 TCR transgenic CD8+ T cells were isolated. Naive CD8+ T cells were stimulated with plate-bound anti-CD3 and anti-CD28 in the presence of rhIL-2 for 3 days.
GSM1309514_JunB	GSM1309514_JunB.bed	T-Cells	[PC] Effector CD8+ (P14 TCR)	JunB	mm10	GSE54191	GSM1309514	Primary P14 TCR transgenic CD8+ T cells were isolated. Naive CD8+ T cells were stimulated with plate-bound anti-CD3 and anti-CD28 in the presence of rhIL-2 for 3 days.
GSM1309515_JunD	GSM1309515_JunD.bed	T-Cells	[PC] Effector CD8+ (P14 TCR)	JunD	mm10	GSE54191	GSM1309515	Primary P14 TCR transgenic CD8+ T cells were isolated. Naive CD8+ T cells were stimulated with plate-bound anti-CD3 and anti-CD28 in the presence of rhIL-2 for 3 days.
GSM1314656_Atf3	GSM1314656_Atf3.bed	Primary murine bone marrow macrophage cells	[PC] C57BL/6	Atf3	mm10	GSE54414	GSM1314656	genotype/variation: wild type. age: 8-12 weeks. tissue: primary murine bone marrow macrophage cells (BMMs). stimuated with: lipopolysaccharide (LPS). time after lps stimulation: 240 minutes. 3?×?107 BMMs were fixed for 10?min in 1% formaldehyde in PBS; washed in PBS; and harvested by scraping in PBS. Cells were lysed by resuspending cell pellets in RIPA buffer (10mM Tris-HCl; pH8.0; 140 mM NaCl; 1% Triton X-100; 0.1% SDS; 1% Deoxcholic acid sodium salt) and drawing the cell suspensions three times through a 30 gauge needle. Chromatin was sheared using a probe sonicator (130 W Ultrasonic Processor with a 3mm tip; 5?×?60s at 30% maximum setting). Sonication quality was checked by gel electrophoresis. Protein concentrations in the extracts were determined (BioRad DC Protein Assay Kit I # 500-111) and sonicated cell extracts containing 0.5 mg protein were incubated with antibodies overnight at 4oC. Immune complexes were recovered by incubation with a 50%-50% mix of magnetic beads coated with Protein A or Protein G (Dynabeads Protein A Invitrogen # 100.02D; Dynabeads Protein G Invitrogen # 100.04D). The magnetic beads were washed with RIPA buffer and the chromatin was eluted with 1% SDS in TE buffer (10 mM Tris-HCl pH8.0; 1 mM EDTA pH8.0) at 65oC for 15 min. Eluted chromatin was reverse-cross-linked by adding 226 mM NaCl and incubating at 65oC for > 5 hr. Then 36 mM Tris–HCl pH8.0; 9 mM EDTA; and 1.5 U of Proteinase K (Fermentas # EO0491) was added to the samples and they were incubated at 42oC for > 1 hr. DNA was purified using phenol/chloroform/isoamyl alcohol (25:24:1; v:v:v) extraction. The purified immunoprecipitated DNA was prepared for sequencing with the Illumina ChIP-Seq Sample Prep Kit and processed according to the manufacturer’s instructions (Illumina Part # 11257047 Rev. A).
GSM1314665_Polr2a	GSM1314665_Polr2a.bed	Primary murine bone marrow macrophage cells	[PC] C57BL/6	Polr2a	mm10	GSE54414	GSM1314665-GSM1314678	genotype/variation: wild type. age: 8-12 weeks. tissue: primary murine bone marrow macrophage cells (BMMs). stimuated with: lipopolysaccharide (LPS). time after lps stimulation: 240 minutes. 3?×?107 BMMs were fixed for 10?min in 1% formaldehyde in PBS; washed in PBS; and harvested by scraping in PBS. Cells were lysed by resuspending cell pellets in RIPA buffer (10mM Tris-HCl; pH8.0; 140 mM NaCl; 1% Triton X-100; 0.1% SDS; 1% Deoxcholic acid sodium salt) and drawing the cell suspensions three times through a 30 gauge needle. Chromatin was sheared using a probe sonicator (130 W Ultrasonic Processor with a 3mm tip; 5?×?60s at 30% maximum setting). Sonication quality was checked by gel electrophoresis. Protein concentrations in the extracts were determined (BioRad DC Protein Assay Kit I # 500-111) and sonicated cell extracts containing 0.5 mg protein were incubated with antibodies overnight at 4oC. Immune complexes were recovered by incubation with a 50%-50% mix of magnetic beads coated with Protein A or Protein G (Dynabeads Protein A Invitrogen # 100.02D; Dynabeads Protein G Invitrogen # 100.04D). The magnetic beads were washed with RIPA buffer and the chromatin was eluted with 1% SDS in TE buffer (10 mM Tris-HCl pH8.0; 1 mM EDTA pH8.0) at 65oC for 15 min. Eluted chromatin was reverse-cross-linked by adding 226 mM NaCl and incubating at 65oC for > 5 hr. Then 36 mM Tris–HCl pH8.0; 9 mM EDTA; and 1.5 U of Proteinase K (Fermentas # EO0491) was added to the samples and they were incubated at 42oC for > 1 hr. DNA was purified using phenol/chloroform/isoamyl alcohol (25:24:1; v:v:v) extraction. The purified immunoprecipitated DNA was prepared for sequencing with the Illumina ChIP-Seq Sample Prep Kit and processed according to the manufacturer’s instructions (Illumina Part # 11257047 Rev. A).
GSM1314672_Polr2a	GSM1314672_Polr2a.bed	Primary murine bone marrow macrophage cells	[PC] C57BL/6	Polr2a	mm10	GSE54414	GSM1314672	genotype/variation: wild type. age: 8-12 weeks. tissue: primary murine bone marrow macrophage cells (BMMs). stimuated with: none (unstimulated control). time after lps stimulation: 0 (no stim). 3?×?107 BMMs were fixed for 10?min in 1% formaldehyde in PBS; washed in PBS; and harvested by scraping in PBS. Cells were lysed by resuspending cell pellets in RIPA buffer (10mM Tris-HCl; pH8.0; 140 mM NaCl; 1% Triton X-100; 0.1% SDS; 1% Deoxcholic acid sodium salt) and drawing the cell suspensions three times through a 30 gauge needle. Chromatin was sheared using a probe sonicator (130 W Ultrasonic Processor with a 3mm tip; 5?×?60s at 30% maximum setting). Sonication quality was checked by gel electrophoresis. Protein concentrations in the extracts were determined (BioRad DC Protein Assay Kit I # 500-111) and sonicated cell extracts containing 0.5 mg protein were incubated with antibodies overnight at 4oC. Immune complexes were recovered by incubation with a 50%-50% mix of magnetic beads coated with Protein A or Protein G (Dynabeads Protein A Invitrogen # 100.02D; Dynabeads Protein G Invitrogen # 100.04D). The magnetic beads were washed with RIPA buffer and the chromatin was eluted with 1% SDS in TE buffer (10 mM Tris-HCl pH8.0; 1 mM EDTA pH8.0) at 65oC for 15 min. Eluted chromatin was reverse-cross-linked by adding 226 mM NaCl and incubating at 65oC for > 5 hr. Then 36 mM Tris–HCl pH8.0; 9 mM EDTA; and 1.5 U of Proteinase K (Fermentas # EO0491) was added to the samples and they were incubated at 42oC for > 1 hr. DNA was purified using phenol/chloroform/isoamyl alcohol (25:24:1; v:v:v) extraction. The purified immunoprecipitated DNA was prepared for sequencing with the Illumina ChIP-Seq Sample Prep Kit and processed according to the manufacturer’s instructions (Illumina Part # 11257047 Rev. A).
GSM1314673_Polr2a	GSM1314673_Polr2a.bed	Primary murine bone marrow macrophage cells	[PC] C57BL/6	Polr2a	mm10	GSE54414	GSM1314673-GSM1314677	genotype/variation: wild type. age: 8-12 weeks. tissue: primary murine bone marrow macrophage cells (BMMs). stimuated with: lipopolysaccharide (LPS). time after lps stimulation: 60 minutes. 3?×?107 BMMs were fixed for 10?min in 1% formaldehyde in PBS; washed in PBS; and harvested by scraping in PBS. Cells were lysed by resuspending cell pellets in RIPA buffer (10mM Tris-HCl; pH8.0; 140 mM NaCl; 1% Triton X-100; 0.1% SDS; 1% Deoxcholic acid sodium salt) and drawing the cell suspensions three times through a 30 gauge needle. Chromatin was sheared using a probe sonicator (130 W Ultrasonic Processor with a 3mm tip; 5?×?60s at 30% maximum setting). Sonication quality was checked by gel electrophoresis. Protein concentrations in the extracts were determined (BioRad DC Protein Assay Kit I # 500-111) and sonicated cell extracts containing 0.5 mg protein were incubated with antibodies overnight at 4oC. Immune complexes were recovered by incubation with a 50%-50% mix of magnetic beads coated with Protein A or Protein G (Dynabeads Protein A Invitrogen # 100.02D; Dynabeads Protein G Invitrogen # 100.04D). The magnetic beads were washed with RIPA buffer and the chromatin was eluted with 1% SDS in TE buffer (10 mM Tris-HCl pH8.0; 1 mM EDTA pH8.0) at 65oC for 15 min. Eluted chromatin was reverse-cross-linked by adding 226 mM NaCl and incubating at 65oC for > 5 hr. Then 36 mM Tris–HCl pH8.0; 9 mM EDTA; and 1.5 U of Proteinase K (Fermentas # EO0491) was added to the samples and they were incubated at 42oC for > 1 hr. DNA was purified using phenol/chloroform/isoamyl alcohol (25:24:1; v:v:v) extraction. The purified immunoprecipitated DNA was prepared for sequencing with the Illumina ChIP-Seq Sample Prep Kit and processed according to the manufacturer’s instructions (Illumina Part # 11257047 Rev. A).
GSM1314674_Polr2a	GSM1314674_Polr2a.bed	Primary murine bone marrow macrophage cells	[PC] C57BL/6	Polr2a	mm10	GSE54414	GSM1314674	genotype/variation: wild type. age: 8-12 weeks. tissue: primary murine bone marrow macrophage cells (BMMs). stimuated with: lipopolysaccharide (LPS). time after lps stimulation: 120 minutes. 3?×?107 BMMs were fixed for 10?min in 1% formaldehyde in PBS; washed in PBS; and harvested by scraping in PBS. Cells were lysed by resuspending cell pellets in RIPA buffer (10mM Tris-HCl; pH8.0; 140 mM NaCl; 1% Triton X-100; 0.1% SDS; 1% Deoxcholic acid sodium salt) and drawing the cell suspensions three times through a 30 gauge needle. Chromatin was sheared using a probe sonicator (130 W Ultrasonic Processor with a 3mm tip; 5?×?60s at 30% maximum setting). Sonication quality was checked by gel electrophoresis. Protein concentrations in the extracts were determined (BioRad DC Protein Assay Kit I # 500-111) and sonicated cell extracts containing 0.5 mg protein were incubated with antibodies overnight at 4oC. Immune complexes were recovered by incubation with a 50%-50% mix of magnetic beads coated with Protein A or Protein G (Dynabeads Protein A Invitrogen # 100.02D; Dynabeads Protein G Invitrogen # 100.04D). The magnetic beads were washed with RIPA buffer and the chromatin was eluted with 1% SDS in TE buffer (10 mM Tris-HCl pH8.0; 1 mM EDTA pH8.0) at 65oC for 15 min. Eluted chromatin was reverse-cross-linked by adding 226 mM NaCl and incubating at 65oC for > 5 hr. Then 36 mM Tris–HCl pH8.0; 9 mM EDTA; and 1.5 U of Proteinase K (Fermentas # EO0491) was added to the samples and they were incubated at 42oC for > 1 hr. DNA was purified using phenol/chloroform/isoamyl alcohol (25:24:1; v:v:v) extraction. The purified immunoprecipitated DNA was prepared for sequencing with the Illumina ChIP-Seq Sample Prep Kit and processed according to the manufacturer’s instructions (Illumina Part # 11257047 Rev. A).
GSM1394999_Gata6	GSM1394999_Gata6.bed	Mouse Embryonic fibroblasts	[CL] C57BL/6J-Tg(GOFGFP)11Imeg	Gata6	mm10	GSE57849	GSM1394999-GSM1395000	ChIP-Seq: After sonicating nuclei; histone-DNA complexes were isolated with antibody. ChIP-Seq: Libraries were constructed according to Illumina's NEXTflexTM ChIP-Seq Kit (Catalog # 5143-02). RNA-Seq: Total RNA was extracted from each cell line using TRIzol reagent. RNA-Seq: 1 ug of total RNA was used to prepare libraries according to Illumina TruSeq RNA Sample Prep Kit (Part # 15027084).
GSM1409206_Hoxa9	GSM1409206_Hoxa9.bed	Hematopoietic Stem Cells	[PC] HSC	Hoxa9	mm10	GSE58362	GSM1409206	N/A
GSM1409207_Cebpa	GSM1409207_Cebpa.bed	Hematopoietic Stem Cells	[PC] HSC	Cebpa	mm10	GSE58362	GSM1409207	N/A
GSM288345_Nanog	GSM288345_Nanog.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Nanog	mm10	GSE11431	GSM288345	N/A
GSM288346_Oct4	GSM288346_Oct4.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Pou5f1	mm10	GSE11431	GSM288346	N/A
GSM288347_Sox2	GSM288347_Sox2.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Sox2	mm10	GSE11431	GSM288347	N/A
GSM288348_Smad1	GSM288348_Smad1.bed	Embryonic Stem Cells	[PCL] E14 ES cells	Smad1	mm10	GSE11431	GSM288348	N/A
GSM288349_E2f1	GSM288349_E2f1.bed	Embryonic Stem Cell	[PCL] E14 ES cells	E2f1	mm10	GSE11431	GSM288349	N/A
GSM288350_Tcfcp2l1	GSM288350_Tcfcp2l1.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Tfcp2l1	mm10	GSE11431	GSM288350	N/A
GSM288351_CTCF	GSM288351_CTCF.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ctcf	mm10	GSE11431	GSM288351	N/A
GSM288352_Zfx	GSM288352_Zfx.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Zfx	mm10	GSE11431	GSM288352	N/A
GSM288353_Stat3	GSM288353_Stat3.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Stat3	mm10	GSE11431	GSM288353	N/A
GSM288354_Klf4	GSM288354_Klf4.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Klf4	mm10	GSE11431	GSM288354	N/A
GSM288355_Esrrb	GSM288355_Esrrb.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Esrrb	mm10	GSE11431	GSM288355	N/A
GSM288356_Myc	GSM288356_Myc.bed	Embryonic Stem Cells	[PCL] E14 ES cells	Myc	mm10	GSE11431	GSM288356	N/A
GSM288357_n-Myc	GSM288357_n-Myc.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Mycn	mm10	GSE11431	GSM288357	N/A
GSM288360_Suz12	GSM288360_Suz12.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Suz12	mm10	GSE11431	GSM288360	N/A
GSM307137_Oct4	GSM307137_Oct4.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Pou5f1	mm10	GSE11724	GSM307137	N/A
GSM307138_Sox2	GSM307138_Sox2.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Sox2	mm10	GSE11724	GSM307138-GSM307139	N/A
GSM307140_Nanog	GSM307140_Nanog.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Nanog	mm10	GSE11724	GSM307140-GSM307141	N/A
GSM307142_Tcf3	GSM307142_Tcf3.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Tcf3	mm10	GSE11724	GSM307142-GSM307143	N/A
GSM307144_Suz12	GSM307144_Suz12.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Suz12	mm10	GSE11724	GSM307144-GSM307145	N/A
GSM327668_Ezh2	GSM327668_Ezh2.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Ezh2	mm10	GSE13084	GSM327668	N/A
GSM415050_Mtf2	GSM415050_Mtf2.bed	Embryonic Stem Cell	[PCL] R1 ES cells	Mtf2	mm10	GSE16526	GSM415050	N/A
GSM417015_Gata1	GSM417015_Gata1.bed	Erythroid	[CL] MEL86 erythroid	Gata1	mm10	GSE16594	GSM417015	MEL86 erythroid cell line expressing metabolically biotinylated GATA-1 (MEL Bio-GATA-1)
GSM440256_Eset	GSM440256_Eset.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Setdb1	mm10	GSE17642	GSM440256	N/A
GSM453997_Gata1	GSM453997_Gata1.bed	Erythroid	[CL] G1E-ER4; estradiol treated	Gata1	mm10	GSE18164	GSM453997	Gata1 restored erythroid cells; differentiation induced by estradiol (E2) 24hrs
GSM464634_Scl	GSM464634_Scl.bed	Erythroid	[PC] Erythroblast	Tal1	mm10	GSE18720	GSM464634	TER119- cells from E12.5 FL
GSM464636_Scl	GSM464636_Scl.bed	Erythroid	[PC] Erythroblast RER	Tal1	mm10	GSE18720	GSM464636	TER119- cells from E12.5 FL (RER - DNA binding mutant)
GSM470523_Nr5a2	GSM470523_Nr5a2.bed	Embryonic stem cells	[PCL] E14 ES cells	Nr5a2	mm10	GSE19019	GSM470523	ES cells expressing HA-Nr5a2. HA antibody used.
GSM499030_Ebf	GSM499030_Ebf.bed	B-Cells	[CL] 38B9 Pro-B-Cells	Ebf1	mm10	GSE19971	GSM499030	N/A
GSM515662_POL2	GSM515662_POL2.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Polr2a	mm10	GSE20485	GSM515662	Polr2a serine 5 phosphorylation antibody
GSM515663_POL2	GSM515663_POL2.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Polr2a	mm10	GSE20485	GSM515663	Polr2a serine 2 phosphorylation antibody
GSM515665_Supt5	GSM515665_Supt5.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Supt5	mm10	GSE20485	GSM515665	N/A
GSM515666_Ctr9	GSM515666_Ctr9.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Ctr9	mm10	GSE20485	GSM515666	N/A
GSM515667_74_Nterm_control	GSM515667_74_Nterm_control.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; control knoockdown	Polr2a	mm10	GSE20485	GSM515667-GSM515674	ES cells expressing control shRNA
GSM515668_POL2_shrna_NelfA	GSM515668_POL2_shrna_NelfA.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; NelfA knockdown	Polr2a	mm10	GSE20485	GSM515668	ES cells expressing shRNA targeting NelfA
GSM515669_POL2_shrna_Supt5	GSM515669_POL2_shrna_Supt5.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; Supy5 knockdown	Polr2a	mm10	GSE20485	GSM515669	ES cells expressing shRNA targeting Supt5
GSM515670_POL2_DMSO_1h	GSM515670_POL2_DMSO_1h.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; DMSO treated	Polr2a	mm10	GSE20485	GSM515670	ES cells treated with DMSO for 1 hour
GSM515671_POL2_Flavopiridol	GSM515671_POL2_Flavopiridol.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; Fllavopiridol treated	Polr2a	mm10	GSE20485	GSM515671	ES cells treated with Flavopiridol for 1 hour
GSM515672_POL2_DMSO_6h	GSM515672_POL2_DMSO_6h.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; DMSO treated	Polr2a	mm10	GSE20485	GSM515672	ES cells treated with DMSO for 6 hours
GSM515673_POL2_10058F4	GSM515673_POL2_10058F4.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; 10058-F4 treated	Polr2a	mm10	GSE20485	GSM515673	ES cells treated with c-Myc inhibitor (10058-F4) for 6 hours
GSM515675_POL2_shcMyc	GSM515675_POL2_shcMyc.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells; c-Myc knockdown	Polr2a	mm10	GSE20485	GSM515675	ES cells expressing shRNA targeting c-Myc
GSM515676_POL2_Dox0h	GSM515676_POL2_Dox0h.bed	Embryonic Stem Cell	[PCL] ZHBTc4 ES cells	Polr2a	mm10	GSE20485	GSM515676	Inducible Oct4 repression via Tet-OFF system; no dox added
GSM515677_POL2_Dox12h	GSM515677_POL2_Dox12h.bed	Embryonic Stem Cell	[PCL] ZHBTc4 ES cells; Oct4 repressed	Polr2a	mm10	GSE20485	GSM515677	Inducible Oct4 repression via Tet-OFF system; dox added for 12 hours
GSM515678_POL2_Dox24h	GSM515678_POL2_Dox24h.bed	Embryonic Stem Cell	[PCL] ZHBTc4 ES cells; Oct4 repressed	Polr2a	mm10	GSE20485	GSM515678	Inducible Oct4 repression via Tet-OFF system; dox added for 24 hours
GSM523221_Gata3	GSM523221_Gata3.bed	T-Cells	[PC] DN	Gata3	mm10	GSE20898	GSM523221	CD3-CD4-CD8-
GSM523222_Gata3	GSM523222_Gata3.bed	T-Cells	[PC] DP	Gata3	mm10	GSE20898	GSM523222	CD4+ CD8int-hi
GSM523223_Gata3	GSM523223_Gata3.bed	T-Cells	[PC] CD4+	Gata3	mm10	GSE20898	GSM523223	CD3hiCD4+CD8- (isolated from Lymph nodes)
GSM523224_Gata3	GSM523224_Gata3.bed	T-Cells	[PC] CD8	Gata3	mm10	GSE20898	GSM523224	CD3hiCD4-CD8+
GSM523225_Gata3	GSM523225_Gata3.bed	T-Cells	[PC] Th1 CD4+	Gata3	mm10	GSE20898	GSM523225	Purified CD4+ T cells (lymph nodes) were co-cultured with APC; in the presence of anti-CD3 and anti-CD28. Additionally; anti-IL-4; IL-12 and IL-2 were added. After 4 days of stimulation; cells were cultured in IL-2-containing medium for another 2-3 days.
GSM523226_Gata3	GSM523226_Gata3.bed	T-Cells	[PC] Th2	Gata3	mm10	GSE20898	GSM523226	Purified CD4+ T cells (lymph nodes) were co-cultured with APC; in the presence of anti-CD3 and anti-CD28. Additionally; anti-IFN and anti-IL-12; IL-4 and IL-2 were added. After 4 days of stimulation; cells were cultured in IL-2-containing medium for another 2-3 days.
GSM523228_Gata3	GSM523228_Gata3.bed	T-Cells	[PC] Th17	Gata3	mm10	GSE20898	GSM523228	Sorted naive Foxp3-RFP- CD4+ T cells (lymph nodes) were co-cultured with APC; in the presence of anti-CD3 and anti-CD28. Additionally; anti-IL-4; anti-IFN; anti-IL-12; TGF; IL-6 and IL-1 were added. After 4 days of stimulation; cells were maintained in regular medium without IL-2. Cells were then sorted for Foxp3-RFP- CD4+ T cells.
GSM523229_Gata3	GSM523229_Gata3.bed	T-Cells	[PC] iTreg	Gata3	mm10	GSE20898	GSM523229	Sorted naive Foxp3-RFP- CD4+ T cells (lymph nodes) were co-cultured with APC; in the presence of anti-CD3 and anti-CD28. Additionally; anti-IL-4; anti-IFN; anti-IL-12; TGF and IL-2 were added. After 4 days of stimulation; cells were cultured in IL-2-containing medium for another 2-3 days. Cells were then sorted for Foxp3-RFP+ CD4+ T cells.
GSM523230_Gata3	GSM523230_Gata3.bed	T-Cells	[PC] nTreg	Gata3	mm10	GSE20898	GSM523230	CD4+CD25h (isolated from Lymph nodes)
GSM523231_Gata3	GSM523231_Gata3.bed	T-Cells	[PC] NKT	Gata3	mm10	GSE20898	GSM523231	TCRbeta+B220-CD1d- alpha-GalCertetramer+ (from liver)
GSM530318_Rag2	GSM530318_Rag2.bed	T-Cells	[PC] Thymocytes	Rag2	mm10	GSE21207	GSM530318	Developing lymphocytes were analyzed or purified by flow cytometry. Thymocytes were almost entirely CD4+CD8+ pre-T cells.
GSM539537_8_Sfpi1	GSM539537_8_Sfpi1.bed	B-Cells	[CL] 38B9 Pro-B-Cells 	Spi1	mm10	GSE21614	GSM539537-GSM539538	NULL
GSM539545_Smad3	GSM539545_Smad3.bed	B-Cells	[CL] 38B9 Pro-B-Cells; TGFbeta treated	Smad3	mm10	GSE21614	GSM539545	TGFbeta for 1 hr
GSM540722_Stat3	GSM540722_Stat3.bed	T-Cells	[PC] Th17	pStat3	mm10	GSE21669	GSM540722	Control (STAT3fl/fl) naive CD4+CD44-CD62L+ T cells were isolated and sorted (thymus; spleen; mesenteric lymph nodes; and colon lamina propria). Cells were cultured for 72h with platebound anti-CD3; anti-CD28; IL-6 and TGF-b with blocking antibodies to IL-2; IL-4 and IFN-g. Cells were restimulated for 1h with IL-6.
GSM545882_5_Sfpi1	GSM545882_5_Sfpi1.bed	Erythroid Progenitors	[CL] MEL (Gata1/ER)	Spi1	mm10	GSE21953	GSM545882-GSM545885	Murine erythroleukemia (MEL) cells stably transfected with Gata-1 fused to ER
GSM545888_91_Sfpi1	GSM545888_91_Sfpi1.bed	Erythroid progenitor	[PCL] Erythroid progenitors (ES cell derived)	Spi1	mm10	GSE21953	GSM545888-GSM545891	N/A
GSM546525_Foxo1	GSM546525_Foxo1.bed	B-Cells	[PC] Pro-B-Cells (Rag1-/-)	Foxo1	mm10	GSE21978	GSM546525	Pro-B cells were isolated from femoral bone marrow of Rag1 knockout mice by positive enrichment of B220+ cells using magnetic separation and expanded for 10 d in the presence of IL-7 and SCF.
GSM546526_Ctcf	GSM546526_Ctcf.bed	B-Cells	[PC] Pro-B-Cells (Rag1-/-)	Ctcf	mm10	GSE21978	GSM546526	Pro-B cells were isolated from femoral bone marrow of Rag1 knockout mice by positive enrichment of B220+ cells using magnetic separation and expanded for 10 d in the presence of IL-7 and SCF.
GSM549337_39_41_Myb	GSM549337_39_41_Myb.bed	Myeloid Progenitors	[CL] ERMYB (granulocyte/macrophage precursor)	Myb	mm10	GSE22095	GSM549337-GSM549339-GSM549341	Cells were cultured in the presence of beta-estradiol (antibody used ER)
GSM550303_Stat4	GSM550303_Stat4.bed	T-Cells	[PC] Th1 CD4+	Stat4	mm10	GSE22104	GSM550303	Naive CD4+CD44-CD62L+ T cells were isolated (spleen and lymph nodes) and sorted. Cells were cultured with platebound anti-CD3; anti-CD28; IL-12 and anti-IL-4 for 3 days; followed by IL-2 and IL-12 for 4 days. After 7 day in vitro culture; cells were restimulated with plate-bound anti-CD3; anti-CD28 and IL-12 for 2 hrs.
GSM550311_Stat6	GSM550311_Stat6.bed	T-Cells	[PC] Th2	Stat6	mm10	GSE22104	GSM550311	Naive CD4+CD44-CD62L+ T cells were isolated (spleen and lymph nodes) and sorted. Cells were cultured for 72h with platebound anti-CD3; anti-CD28; IL-4 and anti-IFN-g for 3 days; followed by IL-2 and IL-4 for 4 days. After 7 day in vitro culture; cells were restimulated with plate-bound IL-4 for 2 hrs.
GSM552233_Fli1	GSM552233_Fli1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Fli1	mm10	GSE22178	GSM552233	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552234_Gata2	GSM552234_Gata2.bed	Multipotent myeloid progenitor	[CL] HPC-7	Gata2	mm10	GSE22178	GSM552234	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552235_Gfi1b	GSM552235_Gfi1b.bed	Multipotent myeloid progenitor	[CL] HPC-7	Gfi1b	mm10	GSE22178	GSM552235	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552238_Lyl1	GSM552238_Lyl1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Lyl1	mm10	GSE22178	GSM552238	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552239_Meis1	GSM552239_Meis1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Meis1	mm10	GSE22178	GSM552239	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552240_Sfpi1	GSM552240_Sfpi1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Spi1	mm10	GSE22178	GSM552240	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552241_Runx1	GSM552241_Runx1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Runx1	mm10	GSE22178	GSM552241	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM552242_Tal1	GSM552242_Tal1.bed	Multipotent myeloid progenitor	[CL] HPC-7	Tal1	mm10	GSE22178	GSM552242	Multipotent myeloid progenitor cell line derived from ES cells retrovirally transduced with Lh2.
GSM555160_2_TBP	GSM555160_2_TBP.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Tbp	mm10	GSE22303	GSM555160-GSM555162	N/A
GSM558904_Gata4	GSM558904_Gata4.bed	Cardiac muscle	[CL] HL-1	Gata4	mm10	GSE21529	GSM558904	Confluent HL-1 cells were infected with adenovirus expressing rtTA; BirA and Gata4 for 48 hrs. (streptavidin beads)
GSM558905_Mef2a	GSM558905_Mef2a.bed	Cardiac muscle	[CL] HL-1	Mef2a	mm10	GSE21529	GSM558905	Confluent HL-1 cells were infected with adenovirus expressing rtTA; BirA and Mef2a for 48 hrs. (streptavidin beads)
GSM558906_Nkx2-5	GSM558906_Nkx2-5.bed	Cardiac muscle	[CL] HL-1	Nkx2-5	mm10	GSE21529	GSM558906	Confluent HL-1 cells were infected with adenovirus expressing rtTA; BirA and Nkx2-5 for 48 hrs. (streptavidin beads)
GSM558907_Srf	GSM558907_Srf.bed	Cardiac muscle	[CL] HL-1	Srf	mm10	GSE21529	GSM558907	Confluent HL-1 cells were infected with adenovirus expressing rtTA; BirA and Srf for 48 hrs. (streptavidin beads)
GSM558908_Tbx5	GSM558908_Tbx5.bed	Cardiac muscle	[CL] HL-1	Tbx5	mm10	GSE21529	GSM558908	Confluent HL-1 cells were infected with adenovirus expressing rtTA; BirA and Tbx5 for 48 hrs. (streptavidin beads)
GSM558909_Ep300	GSM558909_Ep300.bed	Cardiac muscle	[CL] HL-1	Ep300	mm10	GSE21529	GSM558909	HL-1 cardiac muscle cell line
GSM560341_GSM560342_Smc1	GSM560341_GSM560342_Smc1.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Smc1a	mm10	GSE22562	GSM560341-GSM560342	N/A
GSM560343_GSM560344_Smc3	GSM560343_GSM560344_Smc3.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Smc3	mm10	GSE22562	GSM560343-GSM560344	N/A
GSM560345_Med12	GSM560345_Med12.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Med12	mm10	GSE22562	GSM560345	N/A
GSM560346_Med12	GSM560346_Med12.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Med12	mm10	GSE22562	GSM560346	N/A
GSM560347_GSM560348_Med1	GSM560347_GSM560348_Med1.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Med1	mm10	GSE22562	GSM560347-GSM560348	N/A
GSM560350_Nipbl	GSM560350_Nipbl.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Nipbl	mm10	GSE22562	GSM560350	N/A
GSM560352_Ctcf	GSM560352_Ctcf.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Ctcf	mm10	GSE22562	GSM560352	N/A
GSM566277_Oct4	GSM566277_Oct4.bed	Embryonic Stem Cell	[PCL] CCE ES cells	Pou5f1	mm10	GSE22934	GSM566277	N/A
GSM566278_Rbbp5	GSM566278_Rbbp5.bed	Embryonic Stem Cell	[PCL] CCE ES cells	Rbbp5	mm10	GSE22934	GSM566278	N/A
GSM566280_Wdr5-FL	GSM566280_Wdr5-FL.bed	Embryonic Stem Cell	[CL] CCE ES cells	Wdr5	mm10	GSE22934	GSM566280	N/A
GSM591469_Rad21	GSM591469_Rad21.bed	Embryonic Stem Cell	[PCL] R1/E ES cells	Rad21	mm10	GSE24030	GSM591469	ES cells expressing Rad21-GFP. Anti GFP antibody used
GSM591470_Rad21	GSM591470_Rad21.bed	Embryonic Stem Cell	[PC] R1/E-derived EB	Rad21	mm10	GSE24030	GSM591470	ES cells (expressed Rad21-GFP) differentiated into embryoid bodies for 12 days. Anti-GFP antibody used
GSM594600_p300	GSM594600_p300.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	p300	mm10	GSE24164	GSM594600	N/A
GSM611116-7_Rela	GSM611116-7_Rela.bed	Macrophages	[PC] Bone Marrow Macrophage; LPS treated	Rela	mm10	GSE16723	GSM611116-GSM611117	3 hr LPS stimulated macrophages
GSM611192_Tet1C	GSM611192_Tet1C.bed	Embryonic Stem Cell	[PCL] E14 ES cells; control knockdown	Tet1	mm10	GSE24841	GSM611192	ES cell expressing scrabbled control shRNA. Antbody to Tet1 C-terminus
GSM611194_Tet1N	GSM611194_Tet1N.bed	Embryonic Stem Cell	[PCL] E14 ES cells; control knockdown	Tet1	mm10	GSE24841	GSM611194	ES cell expressing scrabbled control shRNA. Antbody to Tet1 N-terminus
GSM611196_Sin3A	GSM611196_Sin3A.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Sin3a	mm10	GSE24841	GSM611196	N/A
GSM611197_Sin3A	GSM611197_Sin3A.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Sin3a	mm10	GSE24841	GSM611197	N/A
GSM623989_Prdm14	GSM623989_Prdm14.bed	Embryonic Stem Cell	[PCL] LF2 ES cells	Prdm14	mm10	GSE25409	GSM623989	ES cells carrying Flag-HA tagged Prdm14. Flag and HA antibodies used.
GSM632040_POL2	GSM632040_POL2.bed	Embryonic Stem Cell	[PCL]	Polr2a	mm10	GSE25532	GSM632040	129Sv-C57Bl/6 ES cells
GSM632055_Mapk8	GSM632055_Mapk8.bed	Neuron	[PC] ES cell derived terminally differentiated neurons	Mapk8	mm10	GSE25532	GSM632055	N/A
GSM632056_Mapk8	GSM632056_Mapk8.bed	Neuron	[PC] ES cell derived terminally differentiated neurons	Mapk8	mm10	GSE25532	GSM632056	N/A
GSM632057_Nfya	GSM632057_Nfya.bed	Neuron	[PC] ES cell derived terminally differentiated neurons	Nfya	mm10	GSE25532	GSM632057	N/A
GSM632058_Nfya	GSM632058_Nfya.bed	Neuron	[PC] ES cell derived terminally differentiated neurons	Nfya	mm10	GSE25532	GSM632058	N/A
GSM632059_POL2	GSM632059_POL2.bed	Neuron	[PC] ES cell derived terminally differentiated neurons	Polr2a	mm10	GSE25532	GSM632059	N/A
GSM634247_Ctcf-Gfp	GSM634247_Ctcf-Gfp.bed	Embryonic Stem Cell	[PCL] R1/E ES cells	Ctcf	mm10	GSE25777	GSM634247	N/A
GSM641909_Ldb1	GSM641909_Ldb1.bed	Haematopoietic progenitor	[PC] HPC	Ldb1	mm10	GSE26031	GSM641909	Lin- bone marrow haematopoietic progenitor cells
GSM641910_Tal1	GSM641910_Tal1.bed	Haematopoietic progenitor	[PC] HPC	Tal1	mm10	GSE26031	GSM641910	Lin- bone marrow haematopoietic progenitor cells
GSM641911_Gata2	GSM641911_Gata2.bed	Haematopoietic progenitor	[PC] HPC	Gata2	mm10	GSE26031	GSM641911	Lin- bone marrow haematopoietic progenitor cells
GSM644975_Ctcf	GSM644975_Ctcf.bed	B-Cells	[PC] Pro-B-Cells (Rag1-/-)	Ctcf	mm10	GSE26257	GSM644975	Bone marrow cells were isolated from 4- to 8-wk-old Rag1-/- mice and were enriched for CD19+ cells.
GSM644976_Rad21	GSM644976_Rad21.bed	B-Cells	[PC] Pro-B-Cells (Rag1-/-)	Rad21	mm10	GSE26257	GSM644976	Bone marrow cells were isolated from 4- to 8-wk-old Rag1-/- mice and were enriched for CD19+ cells.
GSM647224_p53	GSM647224_p53.bed	Embryonic Stem Cell	[PCL] R1/E ES cells	Trp53	mm10	GSE26362	GSM647224	N/A
GSM647225_p53	GSM647225_p53.bed	Embryonic Stem Cell	[PCL] R1/E ES cells; adriamycin treated	Trp53	mm10	GSE26362	GSM647225	ES cells treated with adriamycin for 8 hours
GSM647226_p53S18P	GSM647226_p53S18P.bed	Embryonic Stem Cell	[CL] R1/E	Trp53S18P	mm10	GSE26362	GSM647226	p53S18P - p53 phosphorylated at residue Ser18
GSM647227_p53S18P	GSM647227_p53S18P.bed	Embryonic Stem Cell	[PCL] R1/E ES cells	Trp53S18P	mm10	GSE26362	GSM647227	ES cells treated with adriamycin for 8hours. p53S18P - p53 phosphorylated at residue Ser18
GSM651192_Dpy30	GSM651192_Dpy30.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Dpy30	mm10	GSE26136	GSM651192	N/A
GSM652877_Stat3	GSM652877_Stat3.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE26552	GSM652877	Naive CD4+CD44-CD62L+ T cells were isolated (spleen and lymph nodes) and sorted. Cells were cultured with platebound anti-CD3; anti-CD28; IL-6; TGF-beta; anti-IL-4 and anti-IL-2 for 3 days. After 3 day in vitro culture; cells were restimulated with IL-6 for 30 mins.
GSM652878_Stat5	GSM652878_Stat5.bed	T-Cells	[PC] Th17	Stat5a/b	mm10	GSE26552	GSM652878	Naive CD4+CD44-CD62L+ T cells were isolated (spleen and lymph nodes) and sorted. Cells were cultured with platebound anti-CD3; anti-CD28; IL-6; TGF-beta; anti-IL-4 and anti-IL-2 for 3 days. After 3 day in vitro culture; cells were restimulated with IL-2 for 30 mins.
GSM654874_Fli1	GSM654874_Fli1.bed	T-Cells	[PC] Th2	Fli1	mm10	GSE20898	GSM654874	Purified CD4+ T cells (lymph nodes) were co-cultured with APC; in the presence of anti-CD3 and anti-CD28. Additionally; anti-IFN and anti-IL-12; IL-4 and IL-2 were added. After 4 days of stimulation; cells were cultured in IL-2-containing medium for another 2-3 days.
GSM656523_Ring1b	GSM656523_Ring1b.bed	Embryonic Stem Cell	[PCL] V6.5 ES cells	Rnf2	mm10	GSE26680	GSM656523	N/A
GSM659799_Tet1	GSM659799_Tet1.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Tet1	mm10	GSE26832	GSM659799	N/A
GSM671415_Stat3	GSM671415_Stat3.bed	Dendritic	[PC] Dendritic; IL-21 treated	Stat3	mm10	GSE27161	GSM671415	Spleen derived. Treated with IL-21 for 2 hours.
GSM671416_Stat3	GSM671416_Stat3.bed	Dendritic	[PC] Dendritic; IL-21 and GM-CSF treated	Stat3	mm10	GSE27161	GSM671416	Spleen derived. Treated with IL-21 and GMCSF for 2 hours.
GSM671418_Stat5B	GSM671418_Stat5B.bed	Dendritic	[PC] Dendritic; GM-CSF treated	Stat5b	mm10	GSE27161	GSM671418	Spleen derived. Treated with GM-CSF for 2 hours
GSM671419_Stat5B	GSM671419_Stat5B.bed	Dendritic	[PC] Dendritic; IL-21 and GM-CSF treated	Stat5b	mm10	GSE27161	GSM671419	Spleen derived. Treated with IL-21 and GMCSF for 2 hours.
GSM687279_Hdac2	GSM687279_Hdac2.bed	Embyonic stem cell	[PCL] V6.5 ES cells	Hdac2	mm10	GSE27844	GSM687279	N/A
GSM687280_Hdac2	GSM687280_Hdac2.bed	Embyonic stem cell	[PCL] V6.5 ES cells	Hdac2	mm10	GSE27844	GSM687280	N/A
GSM687282_Kdm1a	GSM687282_Kdm1a.bed	Embyonic stem cell	[PCL] V6.5 ES cells	Kdm1a	mm10	GSE27844	GSM687282	N/A
GSM687284_Chd4	GSM687284_Chd4.bed	Embyonic stem cell	[PCL] V6.5 ES cells	Chd4	mm10	GSE27844	GSM687284	N/A
GSM687285_Rest	GSM687285_Rest.bed	Embyonic stem cell	[PCL] V6.5 ES cells	Rest	mm10	GSE27844	GSM687285	N/A
GSM699164_p300	GSM699164_p300.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ep300	mm10	GSE28247	GSM699164	N/A
GSM699165_CTCF	GSM699165_CTCF.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ctcf	mm10	GSE28247	GSM699165	N/A
GSM700553_Suz12_Pcl3_shRNA	GSM700553_Suz12_Pcl3_shRNA.bed	Embryonic Stem Cell	[PCL] XG122 ES cells; Pcl3 knockdown	Suz12	mm10	GSE28325	GSM700553	ES cells expresseding shRNA targeting Pcl3
GSM700554_Suz12	GSM700554_Suz12.bed	Embryonic Stem Cell	[PCL] XG122 ES cells	Suz12	mm10	GSE28325	GSM700554	ES cells expressing control shRNA
GSM700555_Phf19	GSM700555_Phf19.bed	Embryonic Stem Cell	[PCL] E14 ES cells; Pcl3 knockdown rescue	Phf19	mm10	GSE28325	GSM700555	ES cells expressing shRNA targeting Pcl3 and a TAP-tagged Pcl3 not recognized by the shRNA
GSM700556_Phf19	GSM700556_Phf19.bed	Embryonic Stem Cell	[PCL] E14 ES cells; Pcl3 knockdown rescue	Phf19	mm10	GSE28325	GSM700556	ES cells expressing shRNA targeting Pcl3 and a TAP-tagged Pcl3 not recognized by the shRNA
GSM703186_Sox2	GSM703186_Sox2.bed	Embryonic Stem Cells	[PCL] ZHBTc4 ES cells	Sox2	mm10	GSE28455	GSM703186	N/A
GSM703187_Sox2	GSM703187_Sox2.bed	Embryonic Stem Cells	[PC] ZHBTc4 ES cells; Oct3/4 deleted	Sox2	mm10	GSE28455	GSM703187	ES cells cultured in FGF4; heparin and Activin A for 1 day after Oct3/4 deleted
GSM703188_Sox2	GSM703188_Sox2.bed	Embryonic Stem Cells	[PC] ZHBTc4 ES cells; Oct3/4 deleted	Sox2	mm10	GSE28455	GSM703188	ES cells cultured in FGF4; heparin and Activin A for 2 days after Oct3/4 deleted
GSM703189_Sox2	GSM703189_Sox2.bed	Embryonic Stem Cells	[PC] ZHBTc4 ES cells; Oct3/4 deleted	Sox2	mm10	GSE28455	GSM703189	ES cells cultured in FGF4; heparin and Activin A for 3 days after Oct3/4 deleted
GSM721212_Mllt3	GSM721212_Mllt3.bed	Leukaemia	[PC] MLL AF9 blasts	Mllt3	mm10	GSE29130	GSM721212	Bone marrow cells were transformed with biotinylated MLL-AF9 (streptavidin beads)
GSM722387_Gata2	GSM722387_Gata2.bed	Erythroid Progenitors	[CL] G1E; beta estradiol and rhBMP4 treated	Gata2	mm10	GSE29193	GSM722387	24 hrs beta estradiol + 2 hrs rhBMP4
GSM722388_Smad1	GSM722388_Smad1.bed	Erythroid Progenitors	[CL] G1E; beta estradiol and rhBMP4 treated	Smad1	mm10	GSE29193	GSM722388	24 hrs beta estradiol + 2 hrs rhBMP4
GSM722390_Gata1	GSM722390_Gata1.bed	Erythroid Progenitors	[CL] G1ER; beta estradiol and rhBMP4 treated	Gata1	mm10	GSE29193	GSM722390	24 hrs beta estradiol + 2 hrs rhBMP4
GSM722391_Smad1	GSM722391_Smad1.bed	Erythroid Progenitors	[CL] G1ER; beta estradiol and rhBMP4 treated	Smad1	mm10	GSE29193	GSM722391	24 hrs beta estradiol + 2 hrs rhBMP4
GSM730630_Runx1	GSM730630_Runx1.bed	Haemogenic endothelium	[PCL] VE-cadherin+ CD41+ (ES cell derived)	Runx1	mm10	GSE29515	GSM730630	N/A
GSM732913_Notch1	GSM732913_Notch1.bed	Leukaemia	[CL] T6E T Lymphocyte	Notch1	mm10	GSE29600	GSM732913	NULL
GSM732914_Rbpj	GSM732914_Rbpj.bed	Leukaemia	[CL] T6E T Lymphocyte	Rbpj	mm10	GSE29600	GSM732914	NULL
GSM732916_Notch1	GSM732916_Notch1.bed	Leukaemia	[CL] G4A2 T Lymphocyte	Notch1	mm10	GSE29600	GSM732916	NULL
GSM732917_Rbpj	GSM732917_Rbpj.bed	Leukaemia	[CL] G4A2 T Lymphocyte	Rbpj	mm10	GSE29600	GSM732917	NULL
GSM746555_6_Tal1	GSM746555_6_Tal1.bed	Erythroid	[CL] G1E	Tal1	mm10	GSE30142	GSM746555-GSM746556	Gata1 null erythroid progenitor
GSM746571_2_Tal1	GSM746571_2_Tal1.bed	Erythroid	[CL] G1E-ER4; estradiol treated	Tal1	mm10	GSE30142	GSM746571-GSM746572	Gata1 restored erythroid cells; differentiation induced by estradiol (E2) 24hrs - ENCODE
GSM746581_2_Gata1	GSM746581_2_Gata1.bed	Erythroid	[PC] Erythroblast	Gata1	mm10	GSE30142	GSM746581-GSM746582	Ter119+ cells from E14.5 FL
GSM746583_4_Tal1	GSM746583_4_Tal1.bed	Erythroid	[PC] Erythroblast	Tal1	mm10	GSE30142	GSM746583-GSM746584	Ter119+ cells from E14.5 FL
GSM749809_Ell2	GSM749809_Ell2.bed	Embryonic Stem Cell	[PCL] KH2 ES cells	Ell2	mm10	GSE30267	GSM749809	N/A
GSM749810_Aff4	GSM749810_Aff4.bed	Embryonic Stem Cell	[PCL] KH2 ES cells	Aff4	mm10	GSE30267	GSM749810	N/A
GSM773994_Tcf7	GSM773994_Tcf7.bed	Haematopoietic progenitors	[CL] EML lympho-hematopoietic progenitor	Tcf7	mm10	GSE31221	GSM773994	Lin-SCA+CD34+
GSM773995_GSM773996_Runx1	GSM773995_GSM773996_Runx1.bed	Haematopoietic progenitors	[CL] EML lympho-hematopoietic progenitor	Runx1	mm10	GSE31221	GSM773995-GSM773996	Lin-SCA+CD34+
GSM774291_Pu1	GSM774291_Pu1.bed	T-Cells	[PC] FLDN1	Spi1	mm10	GSE31235	GSM774291	E13.5-14 Fetal Liver cells were myeloid depleted. Lin-c-Kit+CD27+ FL cells were sorted and cultured in the presence of Flt3-L and IL-7. After 4.5 d of culture; cells were sorted to isolate DN1 (FLDN1; Lin-c-KithiCD45+CD44+CD25-).
GSM774292_Pu1	GSM774292_Pu1.bed	T-Cells	[PC] FLDN2a	Spi1	mm10	GSE31235	GSM774292	E13.5-14 Fetal Liver cells were myeloid depleted. Lin-c-Kit+CD27+ FL cells were sorted and cultured in the presence of Flt3-L and IL-7. At both 4.5 d and 8.5 d of culture; cells were sorted to isolate DN2a cells (FLDN2a; Lin-c-KithiCD45+CD44+CD25+). The FLDN2a sample is a pool of day 4.5 and day 8.5 DN2a cells in approximately 2:1 ratio.
GSM774293_Pu1	GSM774293_Pu1.bed	T-Cells	[PC] FLDN2b	Spi1	mm10	GSE31235	GSM774293	E13.5-14 Fetal Liver cells were myeloid depleted. Lin-c-Kit+CD27+ FL cells were sorted and cultured in the presence of Flt3-L and IL-7. After 8.5 d of culture; cells were sorted for DN2b (FLDN2b; Lin-c-KitintCD45+CD44intCD25+).
GSM774295_Gata3	GSM774295_Gata3.bed	T-Cells	[PC] FLDN1	Gata3	mm10	GSE31235	GSM774295	E13.5-14 Fetal Liver cells were myeloid depleted. Lin-c-Kit+CD27+ FL cells were sorted and cultured in the presence of Flt3-L and IL-7. After 4.5 d of culture; cells were sorted to isolate DN1 (FLDN1; Lin-c-KithiCD45+CD44+CD25-).
GSM774296_Gata3	GSM774296_Gata3.bed	T-Cells	[PC] FLDN2b	Gata3	mm10	GSE31235	GSM774296	E13.5-14 Fetal Liver cells were myeloid depleted. Lin-c-Kit+CD27+ FL cells were sorted and cultured in the presence of Flt3-L and IL-7. After 8.5 d of culture; cells were sorted for DN2b (FLDN2b; Lin-c-KitintCD45+CD44intCD25+).
GSM774297_Gata3	GSM774297_Gata3.bed	T-Cells	[PC] Thy DP (TCRa -/-)	Gata3	mm10	GSE31235	GSM774297	Cells were collected from TCRalpha-/- thymi (4-6 weeks old); by depletion with antibodies against Ter-119; CD19; F4/80; Gr-1; NK1.1; CD122; CD11b; CD11c; c-Kit; CD44 and CD25. After this depletion; 90-95% of cells were CD4+CD8+.
GSM774940_Taf3	GSM774940_Taf3.bed	Embryonic Stem Cell	[PCL] D3 ES cells	Taf3	mm10	GSE31270	GSM774940	N/A
GSM774942_Taf1	GSM774942_Taf1.bed	Embryonic Stem Cell	[PCL] D3 ES cells	Taf1	mm10	GSE31270	GSM774942	N/A
GSM774944_Tbp	GSM774944_Tbp.bed	Embryonic Stem Cell	[PCL] D3 ES cells	Tbp	mm10	GSE31270	GSM774944	N/A
GSM774946_POL2	GSM774946_POL2.bed	Embryonic Stem Cell	[PCL] D3 ES cells	Polr2a	mm10	GSE31270	GSM774946	N/A
GSM788496_Yy1	GSM788496_Yy1.bed	Embryonic Stem Cell	[PCL] BirA ES cells	Yy1	mm10	GSE31786	GSM788496	ES cells expressing Biotin-Yy1. Steptavidin antibody used
GSM832311_Runx1	GSM832311_Runx1.bed	Megakaryoblastic cells	[CL] L8057; TPA treated	Runx1	mm10	GSE33653	GSM832311	Maturation induced by addition of TPA for 72 hrs
GSM832312_Cbfb	GSM832312_Cbfb.bed	Megakaryoblastic cells	[CL] L8057; TPA treated	Cbfb	mm10	GSE33653	GSM832312	Maturation induced by addition of TPA for 72 hrs
GSM832313_Ring1b	GSM832313_Ring1b.bed	Megakaryoblastic cells	[CL] L8057; TPA treated	Rnf2	mm10	GSE33653	GSM832313	Maturation induced by addition of TPA for 72 hrs
GSM832315_Runx1	GSM832315_Runx1.bed	Megakaryoblastic cells	[CL] L8057	Runx1	mm10	GSE33653	GSM832315	NULL
GSM832316_Cbfb	GSM832316_Cbfb.bed	Megakaryoblastic cells	[CL] L8057	Cbfb	mm10	GSE33653	GSM832316	NULL
GSM832317_Ring1b	GSM832317_Ring1b.bed	Megakaryoblastic cells	[CL] L8057	Rnf2	mm10	GSE33653	GSM832317	NULL
GSM832319_Runx1	GSM832319_Runx1.bed	Megakaryoblastic cells	[CL] L8057	Runx1	mm10	GSE33653	GSM832319	NULL
GSM832320_Ring1b	GSM832320_Ring1b.bed	Megakaryoblastic cells	[CL] L8057	Rnf2	mm10	GSE33653	GSM832320	NULL
GSM832321_Runx1	GSM832321_Runx1.bed	T-Cells	[PC] Thymocyte (Runx1fl/fl)	Runx1	mm10	GSE33653	GSM832321	Runx1 fl/fl
GSM832322_Cbfb	GSM832322_Cbfb.bed	T-Cells	[PC] Thymocyte (Runx1fl/fl)	Cbfb	mm10	GSE33653	GSM832322	Runx1 fl/fl
GSM832323_Ring1b	GSM832323_Ring1b.bed	T-Cells	[PC] Thymocyte (Runx1fl/fl)	Rnf2	mm10	GSE33653	GSM832323	Runx1 fl/fl
GSM836124_Tbet	GSM836124_Tbet.bed	T-Cells	[PC] Th1 CD4+	Tbx21	mm10	GSE33802	GSM836124	Splenic and lymph node T cells were obtained by disrupting organs of 8- to 12-week-old mice; naive CD4+CD44-CD62L+ T cells were isolated and sorted on the flow cytometer. Cells were cultured with plate-bound anti-CD3 and anti-CD28; IL-12 and anti-IL-4 for 3 days; followed by IL-2 and IL-12 for 4 days. After 7 day culture in vitro; cells were restimulated for 2hr with plate-bound anti-CD3 and anti-CD28 and IL-12.
GSM838681_Stat1	GSM838681_Stat1.bed	Macrophages	[PC] Bone Marrow Macrophage	Stat1	mm10	GSE33913	GSM838681	Bone marrow from Ikbke+/+ mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF).
GSM838683_Stat1_6h_IFNg	GSM838683_Stat1_6h_IFNg.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Stat1	mm10	GSE33913	GSM838683	Bone marrow from Ikbke+/+ mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF). Cells were then treated IFNg for six hours.
GSM838685_Stat1_6h_IFNb	GSM838685_Stat1_6h_IFNb.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNb treated	Stat1	mm10	GSE33913	GSM838685	Bone marrow from Ikbke+/+ mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF). Cells were then treated IFNb for six hours.
GSM838687_Stat1_ikk	GSM838687_Stat1_ikk.bed	Macrophages	[PC] Bone Marrow Macrophages (Ikbke-/-)	Stat1	mm10	GSE33913	GSM838687	Bone marrow from Ikbke-/- mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF).
GSM838689_Stat1	GSM838689_Stat1.bed	Macrophages	[PC] Bone Marrow Macrophages (Ikbke-/-); IFNg treated	Stat1	mm10	GSE33913	GSM838689	Bone marrow from Ikbke-/- mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF). Cells were then treated IFNg for six hours.
GSM838691_Stat1	GSM838691_Stat1.bed	Macrophages	[PC] Bone Marrow Macrophages (Ikbke-/-); IFNb treated	Stat1	mm10	GSE33913	GSM838691	Bone marrow from Ikbke-/- mice was isolated and differentiated into macrophages with macrophage colony-stimulating factor (M-CSF). Cells were then treated IFNb for six hours.
GSM840466_HoxB4_ESCells_d6	GSM840466_HoxB4_ESCells_d6.bed	Haematopoietic precursor and progenitor cells	[PCL] Day 6 embryoid body cells (HoxB4 expressing CCE ES cell derived)	Hoxb4	mm10	GSE34014	GSM840466	EB day 6 no treatment
GSM840468_HoxB4_ESCells_d10	GSM840468_HoxB4_ESCells_d10.bed	Haematopoietic stem and progenitor cells	[PCL] Day 16 culture (HoxB4 expressing CCE ES cell derived)	Hoxb4	mm10	GSE34014	GSM840468	EB with a hematopoietic cytokine cocktail for 10 days
GSM840470_HoxB4_ESCells_d26	GSM840470_HoxB4_ESCells_d26.bed	Haematopoietic stem and progenitor cells	[PCL] Day 26 culture (HoxB4 expressing CCE ES cell derived)	Hoxb4	mm10	GSE34014	GSM840470	EB with a hematopoietic cytokine cocktail for 20 days
GSM842248_GSM842251_Meis1	GSM842248_GSM842251_Meis1.bed	Myeloblastic	[CL] HM2	Meis1	mm10	GSE33518	GSM842248-GSM842251	5-FU treated BM cells transduced with MSCV HA-Meis1 and Flag-Hoxa9 (antibody used HA)
GSM842249_GSM842252_Hoxa	GSM842249_GSM842252_Hoxa.bed	Myeloblastic	[CL] HM2	Hoxa9	mm10	GSE33518	GSM842249-GSM842252	5-FU treated BM cells were transduced with MSCV HA-Hoxa9 and Flag-Meis1 (antibody used HA)
GSM846042_AF9_MLL	GSM846042_AF9_MLL.bed	Leukaemia	[PC] MLL AF9 blasts	Mllt3	mm10	GSE34261	GSM846042	5-FU treated BM cells transduced with Flag-tagged MLL-AF9
GSM859512_Notch1	GSM859512_Notch1.bed	Leukaemia	[PC] T-ALL	Notch1	mm10	GSE34954	GSM859512	intracellular Notch1-IC over-expressing tumors
GSM860154_STAT5	GSM860154_STAT5.bed	Fibroblast	[PC] Embryonic fibroblasts; Stat5 overexpressing and GH stimulated	STAT5	mm10	GSE34986	GSM860154	Stat5 KO MEFs overexpressing Stat5 stimulated with growth hormone (GH) for 45 min
GSM867156_7_Gata1	GSM867156_7_Gata1.bed	Erythroid progenitor	[PCL] Erythroid progenitors (ES cell derived)	Gata1	mm10	GSE35385	GSM867156-GSM867157	ES-cell derived erythroid progenitors
GSM867158_59_60_Gata1	GSM867158_59_60_Gata1.bed	Erythroid progenitor	[PCL] Erythroid progenitors (ES cell derived)	Gata1	mm10	GSE35385	GSM867158-GSM867160	ES-cell derived erythroid progenitors
GSM872894_Gata1_V205G	GSM872894_Gata1_V205G.bed	Megakaryocyte Progenitors	[CL] G1ME (Gata1-V205G); TPO treated	Gata1 (V205G)	mm10	GSE35644	GSM872894	G1ME cells were infected with MigR1-GATA-1(GATA-1V205G) and harvested 48 hrs later. Cells were cultured in presence of TPO. (HA antibody used for ChIP).
GSM873424_Ddit3	GSM873424_Ddit3.bed	Fibroblast	[PC] Embryonic fibroblasts; tunicamycin treated	Ddit3	mm10	GSE35681	GSM873424	MEFs treated with tunicamycin for 10 hours
GSM873426_Atf3	GSM873426_Atf3.bed	Fibroblast	[PC] Embryonic fibroblasts; tunicamycin treated	Atf4	mm10	GSE35681	GSM873426	MEFs treated with tunicamycin for 10 hours
GSM873983_Rela	GSM873983_Rela.bed	Adipocytes	[CL] 3T3-L1	Rela	mm10	GSE35724	GSM873983	Cells were differentiated in DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methyxanthine for 2 days. They were then transferred to DMEM containing FBS and insulin for a further 2 days. Cells were then maintained in DMEM with FBS. Experiments were done on Day 8 to Day 12 (mature adipocytes). Cells were treated with TNF? for 24h.
GSM876622_23_Ebf1	GSM876622_23_Ebf1.bed	B-Cells	[PC] Pro-B-Cells (Rag2-/-)	Ebf1	mm10	GSE35857	GSM876622-GSM876623	Pro-B cells were isolated from the bone marrow of Rag2-/- mice then were expanded in vitro for 4-5 d on OP9 cells in the presence of IL-7
GSM876624_25_Ebf1	GSM876624_25_Ebf1.bed	B-Cells	[PC] Mature B-Cells	Ebf1	mm10	GSE35857	GSM876624-GSM876625	Mature B-Cell were FACS sorted from lymph nodes of C57BL/6 mice
GSM877317_Ebf1	GSM877317_Ebf1.bed	B-Cells	[PC] B cell enriched splenocytes	Ebf1	mm10	GSE35915	GSM877317	Strain: C57BL/6. Chip antibody: Ebf1 (custom-made against murine Ebf1b)
GSM881052_DC_Ctcf_0	GSM881052_DC_Ctcf_0.bed	Dendritic	[PC] Dendritic	Ctcf	mm10	GSE36099	GSM881052	Ctcf 0 min post LPS stimulation
GSM881053_DC_Ctcf_120	GSM881053_DC_Ctcf_120.bed	Dendritic	[PC] Dendritic; LPS treated	Ctcf	mm10	GSE36099	GSM881053	Bone marrow derived dendritic cells. Ctcf 120 min post LPS stimulation
GSM881054_DC_Ctcf_30	GSM881054_DC_Ctcf_30.bed	Dendritic	[PC] Dendritic; LPS treated	Ctcf	mm10	GSE36099	GSM881054	Bone marrow derived dendritic cells. Ctcf 30 min post LPS stimulation
GSM881055_DC_Ctcf_60	GSM881055_DC_Ctcf_60.bed	Dendritic	[PC] Dendritic; LPS treated	Ctcf	mm10	GSE36099	GSM881055	Bone marrow derived dendritic cells. Ctcf 60 min post LPS stimulation
GSM881056_DC_E2f1_0	GSM881056_DC_E2f1_0.bed	Dendritic	[PC] Dendritic	E2f1	mm10	GSE36099	GSM881056	E2f1 0 min post LPS stimulation
GSM881057_DC_E2f1_120	GSM881057_DC_E2f1_120.bed	Dendritic	[PC] Dendritic; LPS treated	E2f1	mm10	GSE36099	GSM881057	Bone marrow derived dendritic cells. E2f1 120 min post LPS stimulation
GSM881058_DC_E2f1_30	GSM881058_DC_E2f1_30.bed	Dendritic	[PC] Dendritic; LPS treated	E2f1	mm10	GSE36099	GSM881058	Bone marrow derived dendritic cells. E2f1 30 min post LPS stimulation
GSM881059_DC_E2f1_60	GSM881059_DC_E2f1_60.bed	Dendritic	[PC] Dendritic; LPS treated	E2f1	mm10	GSE36099	GSM881059	Bone marrow derived dendritic cells. E2f1 60 min post LPS stimulation
GSM881060_DC_E2f4_0	GSM881060_DC_E2f4_0.bed	Dendritic	[PC] Dendritic	E2f4	mm10	GSE36099	GSM881060	E2f4 0 min post LPS stimulation
GSM881061_DC_E2f4_120	GSM881061_DC_E2f4_120.bed	Dendritic	[PC] Dendritic; LPS treated	E2f4	mm10	GSE36099	GSM881061	Bone marrow derived dendritic cells. E2f4 120 min post LPS stimulation
GSM881062_DC_E2f4_30	GSM881062_DC_E2f4_30.bed	Dendritic	[PC] Dendritic; LPS treated	E2f4	mm10	GSE36099	GSM881062	Bone marrow derived dendritic cells. E2f4 30 min post LPS stimulation
GSM881063_DC_E2f4_60	GSM881063_DC_E2f4_60.bed	Dendritic	[PC] Dendritic; LPS treated	E2f4	mm10	GSE36099	GSM881063	Bone marrow derived dendritic cells. E2f4 60 min post LPS stimulation
GSM881064_DC_Ets2_0	GSM881064_DC_Ets2_0.bed	Dendritic	[PC] Dendritic	Ets2	mm10	GSE36099	GSM881064	Ets2 0 min post LPS stimulation
GSM881065_DC_Ets2_120	GSM881065_DC_Ets2_120.bed	Dendritic	[PC] Dendritic; LPS treated	Ets2	mm10	GSE36099	GSM881065	Bone marrow derived dendritic cells. Ets2 120 min post LPS stimulation
GSM881066_DC_Ets2_30	GSM881066_DC_Ets2_30.bed	Dendritic	[PC] Dendritic; LPS treated	Ets2	mm10	GSE36099	GSM881066	Bone marrow derived dendritic cells. Ets2 30 min post LPS stimulation
GSM881067_DC_Ets2_60	GSM881067_DC_Ets2_60.bed	Dendritic	[PC] Dendritic; LPS treated	Ets2	mm10	GSE36099	GSM881067	Bone marrow derived dendritic cells. Ets2 60 min post LPS stimulation
GSM881068_DC_Hif1a_0	GSM881068_DC_Hif1a_0.bed	Dendritic	[PC] Dendritic	Hif1a	mm10	GSE36099	GSM881068	Hif1a 0 min post LPS stimulation
GSM881069_DC_Hif1a_120	GSM881069_DC_Hif1a_120.bed	Dendritic	[PC] Dendritic; LPS treated	Hif1a	mm10	GSE36099	GSM881069	Bone marrow derived dendritic cells. Hif1a 120 min post LPS stimulation
GSM881070_DC_Hif1a_30	GSM881070_DC_Hif1a_30.bed	Dendritic	[PC] Dendritic; LPS treated	Hif1a	mm10	GSE36099	GSM881070	Bone marrow derived dendritic cells. Hif1a 30 min post LPS stimulation
GSM881071_DC_Hif1a_60	GSM881071_DC_Hif1a_60.bed	Dendritic	[PC] Dendritic; LPS treated	Hif1a	mm10	GSE36099	GSM881071	Bone marrow derived dendritic cells. Hif1a 60 min post LPS stimulation
GSM881072_DC_Irf1_0	GSM881072_DC_Irf1_0.bed	Dendritic	[PC] Dendritic	Irf1	mm10	GSE36099	GSM881072	Irf1 0 min post LPS stimulation
GSM881073_DC_Irf1_120	GSM881073_DC_Irf1_120.bed	Dendritic	[PC] Dendritic; LPS treated	Irf1	mm10	GSE36099	GSM881073	Bone marrow derived dendritic cells. Irf1 120 min post LPS stimulation
GSM881074_DC_Irf1_30	GSM881074_DC_Irf1_30.bed	Dendritic	[PC] Dendritic; LPS treated	Irf1	mm10	GSE36099	GSM881074	Bone marrow derived dendritic cells. Irf1 30 min post LPS stimulation
GSM881075_DC_Irf1_60	GSM881075_DC_Irf1_60.bed	Dendritic	[PC] Dendritic; LPS treated	Irf1	mm10	GSE36099	GSM881075	Bone marrow derived dendritic cells. Irf1 60 min post LPS stimulation
GSM881093_DC_Egr2_30	GSM881093_DC_Egr2_30.bed	Dendritic	[PC] Dendritic; LPS treated	Egr2	mm10	GSE36099	GSM881093	Bone marrow derived dendritic cells. Egr2 30 min post LPS stimulation
GSM881095_DC_Maff_0	GSM881095_DC_Maff_0.bed	Dendritic	[PC] Dendritic	Maff	mm10	GSE36099	GSM881095	Maff 0 min post LPS stimulation
GSM881096_DC_Maff_120	GSM881096_DC_Maff_120.bed	Dendritic	[PC] Dendritic; LPS treated	Maff	mm10	GSE36099	GSM881096	Bone marrow derived dendritic cells. Maff 120 min post LPS stimulation
GSM881097_DC_Maff_30	GSM881097_DC_Maff_30.bed	Dendritic	[PC] Dendritic; LPS treated	Maff	mm10	GSE36099	GSM881097	Bone marrow derived dendritic cells. Maff 30 min post LPS stimulation
GSM881098_DC_Maff_60	GSM881098_DC_Maff_60.bed	Dendritic	[PC] Dendritic; LPS treated	Maff	mm10	GSE36099	GSM881098	Bone marrow derived dendritic cells. Maff 60 min post LPS stimulation
GSM881110_DC_Relb_60	GSM881110_DC_Relb_60.bed	Dendritic	[PC] Dendritic; LPS treated	Relb	mm10	GSE36099	GSM881110	Bone marrow derived dendritic cells. Relb 60 min post LPS stimulation
GSM881111_DC_Rela_0	GSM881111_DC_Rela_0.bed	Dendritic	[PC] Dendritic	Rela	mm10	GSE36099	GSM881111	Rela 0 min post LPS stimulation
GSM881112_DC_Rela_120	GSM881112_DC_Rela_120.bed	Dendritic	[PC] Dendritic; LPS treated	Rela	mm10	GSE36099	GSM881112	Bone marrow derived dendritic cells. Rela 120 min post LPS stimulation
GSM881113_DC_Rela_30	GSM881113_DC_Rela_30.bed	Dendritic	[PC] Dendritic; LPS treated	Rela	mm10	GSE36099	GSM881113	Bone marrow derived dendritic cells. Rela 30 min post LPS stimulation
GSM881114_DC_Rela_60	GSM881114_DC_Rela_60.bed	Dendritic	[PC] Dendritic; LPS treated	Rela	mm10	GSE36099	GSM881114	Bone marrow derived dendritic cells. Rela 60 min post LPS stimulation
GSM881119_DC_Stat3_120	GSM881119_DC_Stat3_120.bed	Dendritic	[PC] Dendritic; LPS treated	Stat3	mm10	GSE36099	GSM881119	Bone marrow derived dendritic cells. Stat3 120 min post LPS stimulation
GSM881121_DC_Stat3_60	GSM881121_DC_Stat3_60.bed	Dendritic	[PC] Dendritic; LPS treated	Stat3	mm10	GSE36099	GSM881121	Bone marrow derived dendritic cells. Stat3 60 min post LPS stimulation
GSM881132_DC_Rel_120	GSM881132_DC_Rel_120.bed	Dendritic	[PC] Dendritic; LPS treated	Rel	mm10	GSE36099	GSM881132	Bone marrow derived dendritic cells. Rel 120 min post LPS stimulation single
GSM881134_DC_Rel_60	GSM881134_DC_Rel_60.bed	Dendritic	[PC] Dendritic; LPS treated	Rel	mm10	GSE36099	GSM881134	Bone marrow derived dendritic cells. Rel 60 min post LPS stimulation
GSM881140_DC_Egr1_120	GSM881140_DC_Egr1_120.bed	Dendritic	[PC] Dendritic; LPS treated	Egr1	mm10	GSE36099	GSM881140	Bone marrow derived dendritic cells. Egr1 120 min post LPS stimulation
GSM881142_DC_Egr1_60	GSM881142_DC_Egr1_60.bed	Dendritic	[PC] Dendritic; LPS treated	Egr1	mm10	GSE36099	GSM881142	Bone marrow derived dendritic cells. Egr1 60 min post LPS stimulation
GSM883646_Smc1a	GSM883646_Smc1a.bed	Neural progenitor cells	[CL] 129SvJae x C57BL/6	Smc1a	mm10	GSE36203	GSM883646	Chromatin immunoprecipitation (ChIP) was performed as previously described with minor modifications (Kagey et al.; 2010). Briefly; 50x106 NPCs were lysed and chromatin was sonicated with a Branson Sonifier 250 for 30 x 12 sec pulses. Chromatin was pre-cleared with Protein A Sepharose beads and then immunoprecipitated with approximately 10 μg of the appropriate antibody coupled to Protein A sepharose beads. For Smc1a ChIP using Bethyl Laboratories (A300-055A) affinity purified rabbit polyclonal antibody; beads were washed 1X with LB3; 1X with 20mM Tris-HCl pH8; 500mM NaCl; 2mM EDTA; 0.1% SDS; 1%Triton X-100; 1X with 10mM Tris-HCl pH8; 250nM LiCl; 2mM EDTA; 1% NP40 and 1X with TE containing 50 mM NaCl. For CTCF ChIP using an Upstate 07-729 rabbit polyclonal antibody; beads were washed 7 times with RIPA buffer and 1X with TE containing 50 mM NaCl. Bound complexes were eluted from the beads by heating at 65°C for 15 min with occasional vortexing. Cross-links were reversed by overnight incubation at 65°C. Whole cell extract DNA reserved from the sonication step was also treated for crosslink reversal. ChIP-seq libraries were prepared for sequencing as recommended by Illumina/Solexa.
GSM883647_Ctcf	GSM883647_Ctcf.bed	Neural progenitor cells	[CL] 129SvJae x C57BL/6	Ctcf	mm10	GSE36203	GSM883647	Chromatin immunoprecipitation (ChIP) was performed as previously described with minor modifications (Kagey et al.; 2010). Briefly; 50x106 NPCs were lysed and chromatin was sonicated with a Branson Sonifier 250 for 30 x 12 sec pulses. Chromatin was pre-cleared with Protein A Sepharose beads and then immunoprecipitated with approximately 10 μg of the appropriate antibody coupled to Protein A sepharose beads. For Smc1a ChIP using Bethyl Laboratories (A300-055A) affinity purified rabbit polyclonal antibody; beads were washed 1X with LB3; 1X with 20mM Tris-HCl pH8; 500mM NaCl; 2mM EDTA; 0.1% SDS; 1%Triton X-100; 1X with 10mM Tris-HCl pH8; 250nM LiCl; 2mM EDTA; 1% NP40 and 1X with TE containing 50 mM NaCl. For CTCF ChIP using an Upstate 07-729 rabbit polyclonal antibody; beads were washed 7 times with RIPA buffer and 1X with TE containing 50 mM NaCl. Bound complexes were eluted from the beads by heating at 65°C for 15 min with occasional vortexing. Cross-links were reversed by overnight incubation at 65°C. Whole cell extract DNA reserved from the sonication step was also treated for crosslink reversal. ChIP-seq libraries were prepared for sequencing as recommended by Illumina/Solexa.
GSM896915_Stag2	GSM896915_Stag2.bed	Embryonic Stem Cells	[PCL] V6.5 ES cells	Stag2	mm10	GSE36561	GSM896915	N/A
GSM896916_Stag1	GSM896916_Stag1.bed	Embryonic Stem Cells	[PCL] V6.5 ES cells	Stag1	mm10	GSE36561	GSM896916	N/A
GSM898200_Cbx7	GSM898200_Cbx7.bed	Haematopoietic progenitor	[PC] HPC	Cbx7	mm10	GSE36658	GSM898200	Mice were injected with 5FU five days prior to sacrifice. Bone marrow cells were isolated and were retrovirally transduced with Flag-Cbx7. Transduced GFP+ cells were sorted and cultured in StemSpan media supplemented with FBS; stem cell factor; IL-11 and Flt3 ligand for 7 days. (antibody used Flag)
GSM898201_Cbx8	GSM898201_Cbx8.bed	Haematopoietic progenitor	[PC] HPC	Cbx8	mm10	GSE36658	GSM898201	Mice were injected with 5FU five days prior to sacrifice. Bone marrow cells were isolated and were retrovirally transduced with Flag-Cbx8. Transduced GFP+ cells were sorted and cultured in StemSpan media supplemented with FBS; stem cell factor; IL-11 and Flt3 ligand for 7 days. (antibody used Flag)
GSM898372_Kdm6b	GSM898372_Kdm6b.bed	Embryonic Stem Cell	[PC] Embryo derived neural stem cells (NSCs); TGFb treated	Kdm6b	mm10	GSE36673	GSM898372	NSCs from cerebral cortex of E12.5 embryos and expanded in vitro and treated with TGFb
GSM904760_Stat5a	GSM904760_Stat5a.bed	T-Cells	[PC] Splenic T cells	Stat5a	mm10	GSE36882	GSM904760	Splenic T cells were isolated from 6-12-week-old tetramer-deficient mice; purified by positive selection using CD90 magnetic beads or negative selection using Mouse Pan T Isolation Kit. Cells were stimulated with platebound anti-CD3 plus anti-CD28 for 2-3 days; washed; rested overnight; and re-stimulated with IL-2 for 1 hour.
GSM904761_Stat5b	GSM904761_Stat5b.bed	T-Cells	[PC] Splenic T cells	Stat5b	mm10	GSE36882	GSM904761	Splenic T cells were isolated from 6-12-week-old tetramer-deficient mice; purified by positive selection using CD90 magnetic beads or negative selection using Mouse Pan T Isolation Kit. Cells were stimulated with platebound anti-CD3 plus anti-CD28 for 2-3 days; washed; rested overnight; and re-stimulated with IL-2 for 1 hour.
GSM904766_Stat5a	GSM904766_Stat5a.bed	T-Cells	[PC] Splenic T cells (stat5a/stat5b double knock in)	Stat5a	mm10	GSE36882	GSM904766	Splenic T cells were isolated from 6-12-week-old tetramer-deficient mice Stat5a/Stat5b KI; purified by positive selection using CD90 magnetic beads or negative selection using Mouse Pan T Isolation Kit. Cells were stimulated with platebound anti-CD3 plus anti-CD28 for 2-3 days; washed; rested overnight; and re-stimulated with IL-2 for 1 hour.
GSM904767_Stat5b	GSM904767_Stat5b.bed	T-Cells	[PC] Splenic T cells (stat5a/stat5b double knock in)	Stat5b	mm10	GSE36882	GSM904767	Splenic T cells were isolated from 6-12-week-old tetramer-deficient mice Stat5a/Stat5b KI; purified by positive selection using CD90 magnetic beads or negative selection using Mouse Pan T Isolation Kit. Cells were stimulated with platebound anti-CD3 plus anti-CD28 for 2-3 days; washed; rested overnight; and re-stimulated with IL-2 for 1 hour.
GSM905442_Pol2ra	GSM905442_Pol2ra.bed	embryonic stem cell	[PCL]	Polr2a	mm10	GSE36905	GSM905442	129-C57Bl/6 ES cells
GSM905445_Ezh2	GSM905445_Ezh2.bed	embryonic stem cell	[PC] Differentiated ES cells	Ezh2	mm10	GSE36905	GSM905445	129-C57Bl/6 ES cell differentiated in vitro by removal of LIF for 7 days
GSM905450_Pol2ra	GSM905450_Pol2ra.bed	embryonic stem cell	[PC] Differentiated ES cells	Polr2a	mm10	GSE36905	GSM905450	129-C57Bl/6 ES cell differentiated in vitro by removal of LIF for 7 days
GSM905457_Pol2ra	GSM905457_Pol2ra.bed	Fibroblast	[CL] Transformed embryonic fibroblast	Polr2a	mm10	GSE36905	GSM905457	N/A
GSM915092_Ncoa3	GSM915092_Ncoa3.bed	Embryonic Stem Cell	[PCL] E14 ES cells	Ncoa3	mm10	GSE40193	GSM915092	N/A
GSM918734_CTCF	GSM918734_CTCF.bed	Thymus	[PC] Thymus	Ctcf	mm10	GSE36027	GSM918734	Whole thymus from 8 week old male C57BL/6 mouse
GSM918744_CTCF	GSM918744_CTCF.bed	Mouse ErythroLeukaemic	[CL] MEL	Ctcf	mm10	GSE36027	GSM918744	NULL
GSM923570_Ctcf	GSM923570_Ctcf.bed	Erythroid	[CL] G1E	Ctcf	mm10	GSE36029	GSM923570	Gata1 null erythroid progenitor
GSM923571_Ctcf	GSM923571_Ctcf.bed	Erythroid	[CL] G1E-ER4; estradiol treated	Ctcf	mm10	GSE36029	GSM923571  	Gata1 restored erythroid cells; differentiation induced by estradiol (E2) 24hrs
GSM923572_Gata1	GSM923572_Gata1.bed	Erythroid	[CL] G1E-ER4; estradiol treated	Gata1	mm10	GSE36029	GSM923572	Gata1 restored erythroid cells; differentiation induced by estradiol (E2) 24hrs
GSM923573_Ctcf	GSM923573_Ctcf.bed	Mouse ErythroLeukaemic	[CL] MEL	Ctcf	mm10	GSE36029	GSM923573	NULL
GSM923575_Gata1	GSM923575_Gata1.bed	Erythroid	[PC] Erythroblast	Gata1	mm10	GSE36029	GSM923575	Ter119+ cells from E14.5 FL
GSM923576_Tal1	GSM923576_Tal1.bed	Erythroid	[CL] G1E-ER4; estradiol treated	Tal1	mm10	GSE36029	GSM923576	Gata1 restored erythroid cells; differentiation induced by estradiol (E2) 24hrs - ENCODE
GSM923578_Tal1	GSM923578_Tal1.bed	Mouse ErythroLeukaemic 	[CL] MEL	Tal1	mm10	GSE36029	GSM923578	NULL
GSM923579_Tal1	GSM923579_Tal1.bed	Erythroid	[CL] G1E	Tal1	mm10	GSE36029	GSM923579  	Gata1 null erythroid progenitor
GSM923586_Gata1	GSM923586_Gata1.bed	Megakaryocyte	[PC] Megakaryocytes	Gata1	mm10	GSE36029	GSM923586	Progenitors are purified from E14.5 mouse embryos and expanded for 7 days in IMDM; FBS; mSCF and TPO. On day 7 cells are then washed and cultured in IMDM with TPO for a further 5 days. CD41+ mature megakaryocytes are then purified.
GSM931695_Hsf1	GSM931695_Hsf1.bed	striatal cells	[PC] Embryo derived striatal cells	Hsf1	mm10	GSE38002	GSM931695	Striatal cells derived from wild type HdhQ7/Q7 embryonic mice
GSM931696_Hsf1	GSM931696_Hsf1.bed	striatal cells	[PC] Embryo derived striatal cells	Hsf1	mm10	GSE38002	GSM931696	Striatal cells derived from HdhQ111/Q111 knock-in embryonic mice
GSM932921_4_Pax5	GSM932921_4_Pax5.bed	B-Cells	[PC] Pro-B-Cells (Pax5 Bio/Bio; Rag2 KO)	Pax5	mm10	GSE38046	GSM932921-GSM932924	Sorted pro-B cells were cultured for 4-5 days on OP9 cells in IL-7. (Dynabeads M-280 Streptavidin)
GSM932925_31_Pax5	GSM932925_31_Pax5.bed	B-Cells	[PC] Mature B-Cells (Pax5 Bio/Bio)	Pax5	mm10	GSE38046	GSM932925-GSM932931	Mature B cells were FACs sorted from lymph nodes of Pax5Bio/Bio mice. (Dynabeads M-280 Streptavidin)
GSM935891_Ell3	GSM935891_Ell3.bed	Embryonic stem cells	[PCL] V6.5 ES cells	Ell3	mm10	GSE38148	GSM935891	N/A
GSM935893_Pol2	GSM935893_Pol2.bed	Embryonic stem cells	[PCL] V6.5 ES cells; control knockdown	Polr2a	mm10	GSE38148	GSM935893	ES cells expressing control shRNA
GSM935895_Pol2	GSM935895_Pol2.bed	Embryonic stem cells	[PCL] V6.5 ES cells; Ell3 knockdown	Polr2a	mm10	GSE38148	GSM935895	ES cells expressing shRNA targeting Ell3
GSM936199_200_Ikzf1	GSM936199_200_Ikzf1.bed	B-Cells	[CL] B3 Pre-B cells	Ikzf1	mm10	GSE38200	GSM936199-GSM936200	WT B3 pre-B cells.
GSM936201_2_Ikzf1	GSM936201_2_Ikzf1.bed	B-Cells	[CL] B3 Pre-B cells	Ikzf1	mm10	GSE38200	GSM936201-GSM936202	B3 cells were transduced with HA-Ikaros-IRES-GFP. (Antibody used HA).
GSM937538_Polr2a	GSM937538_Polr2a.bed	embryonic stem cells	[PCL] V6.5 ES cells; DMSO treated	Polr2a	mm10	GSE36561	GSM937538	ES cells treated with DMSO for 18 hours
GSM937539_Polr2a	GSM937539_Polr2a.bed	embryonic stem cells	[PCL] V6.5 ES cells; JQ1 treated	Polr2a	mm10	GSE36561	GSM937539	ES cells treated with JQ1 for 18 hours
GSM937540_Brd4	GSM937540_Brd4.bed	embryonic stem cells	[PCL] V6.5 ES cells	Brd4	mm10	GSE36561	GSM937540	N/A
GSM937541_Stag1	GSM937541_Stag1.bed	embryonic stem cells	[PCL] V6.5 ES cells	Stag1	mm10	GSE36561	GSM937541	N/A
GSM937542_Stag2	GSM937542_Stag2.bed	embryonic stem cells	[PCL] V6.5 ES cells	Stag2	mm10	GSE36561	GSM937542	N/A
GSM937543_Polr2a	GSM937543_Polr2a.bed	embryonic stem cells	[PCL] V6.5 ES cells; RA treated	Polr2a	mm10	GSE36561	GSM937543	ES cells treated with retinoic acid for 8 hours
GSM950325_Irf8	GSM950325_Irf8.bed	Myeloid progenitor cells	[CL] Tot2 (Irf8 KO)	Irf8	mm10	GSE38824	GSM950325	Tot2 cells were retrovirally transduced with MSCV-IRF8. 3 days after the transduction; the cells were harvested.
GSM959053_Zfp143	GSM959053_Zfp143.bed	Embryonic fibroblast cells	[CL] NIH 3T3	Zfp143	mm10	GSE39263	GSM959053	ChIP-seq_ZFP143_3T3. ChIP assays were performed essentially as previously described (Myslinski et al. 2006) with 1-4x107 cells. The chromatin was sonicated to an average of 200bp using a BioruptorTM UCD-200 (Diagenode) at Maximum power level for 30 minutes (pulses of 30 seconds with 30 seconds breaks).
GSM959054_Zfp143	GSM959054_Zfp143.bed	Embryonic Stem cells	[CL] J1	Zfp143	mm10	GSE39263	GSM959054	ChIP-seq_ZFP143_mESC. ChIP assays were performed essentially as previously described (Myslinski et al. 2006) with 1-4x107 cells. The chromatin was sonicated to an average of 200bp using a BioruptorTM UCD-200 (Diagenode) at Maximum power level for 30 minutes (pulses of 30 seconds with 30 seconds breaks).
GSM959055_Zfp143	GSM959055_Zfp143.bed	Embryonic fibroblast cells	[CL] MEF-like	Zfp143	mm10	GSE39263	GSM959055	ChIP-seq_ZFP143_Fibro. ChIP assays were performed essentially as previously described (Myslinski et al. 2006) with 1-4x107 cells. The chromatin was sonicated to an average of 200bp using a BioruptorTM UCD-200 (Diagenode) at Maximum power level for 30 minutes (pulses of 30 seconds with 30 seconds breaks).
GSM968709_V5	GSM968709_V5.bed	Motor neuron progenitors	[PC] Ainv15 ES cell derived motor neuron progenitors; Cdx2 expressing	Cdx2	mm10	GSE39453	GSM968709	ES cells differentiated in vitro into embryoid bodies for 4 days; all-trans RA and Hh signalling agonist (SAG) at day 2; Cdx2-V5 expression induced for 6-8 hours on day 3
GSM968717_Pol2	GSM968717_Pol2.bed	Motor neuron progenitors	[PC] HBG3 ES cell derived motor neuron progenitors	Polr2a	mm10	GSE39434	GSM968717	ES cells differentiated in vitro into embryoid bodies for 4 days; all-trans RA and Hh signalling agonist (SAG) at day 2
GSM972967_Prep	GSM972967_Prep.bed	Embryonic Trunk	[PC] E11.5 Embryonic trunk	Prep	mm10	GSE39609	GSM972967	N/A
GSM972983_Mbd1a_delMBD	GSM972983_Mbd1a_delMBD.bed	Embryonic Stem Cells	[PCL]	Mbd1	mm10	GSE39610	GSM972983	129-C57Bl/6 ES cells
GSM978747_Irf4	GSM978747_Irf4.bed	B-Cells	[PC] B-Cells	Irf4	mm10	GSE39756	GSM978747	Untreated spleenic B-cells
GSM978748_Irf4	GSM978748_Irf4.bed	B-Cells	[PC] B-Cells; IL-21 treated	Irf4	mm10	GSE39756	GSM978748	Spleenic B-cells were treated IL-21 for 1h
GSM978750_Irf4	GSM978750_Irf4.bed	T-Cells	[PC] CD4+	Irf4	mm10	GSE39756	GSM978750	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days.
GSM978751_Irf4	GSM978751_Irf4.bed	T-Cells	[PC] CD4+; IL-21 treated	Irf4	mm10	GSE39756	GSM978751	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days; rested overnight and stimulated with IL-21 for 1h.
GSM978757_Stat3	GSM978757_Stat3.bed	T-Cells	[PC] CD4+; IL-21 treated	Stat3	mm10	GSE39756	GSM978757	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days; rested overnight and stimulated with IL-21 for 1h.
GSM978758_Batf	GSM978758_Batf.bed	T-Cells	[PC] CD4+; IL-21 treated	Batf	mm10	GSE39756	GSM978758	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days; rested overnight and stimulated with IL-21 for 1h.
GSM978767_Batf	GSM978767_Batf.bed	T-Cells	[PC] Th17	Batf	mm10	GSE39756	GSM978767	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3_days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4_days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM978768_Irf4	GSM978768_Irf4.bed	T-Cells	[PC] Th17	Irf4	mm10	GSE39756	GSM978768	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4 days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM978769_Junb	GSM978769_Junb.bed	T-Cells	[PC] Th17	Junb	mm10	GSE39756	GSM978769	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4 days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM978770_Jun	GSM978770_Jun.bed	T-Cells	[PC] Th17	Jun	mm10	GSE39756	GSM978770	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4 days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM978771_Jund	GSM978771_Jund.bed	T-Cells	[PC] Th17	Jund	mm10	GSE39756	GSM978771	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4 days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM978772_Stat3	GSM978772_Stat3.bed	T-Cells	[PC] Th17	Stat3	mm10	GSE39756	GSM978772	T cells were isolated from the spleen. Cells were pre-activated with plate-bound anti-CD3 and soluble anti-CD28 for 3 days. For Th17 polarization; cells were subjected to 2 rounds of polarization with anti-CD3 and anti-CD28 for 4 days in the presence of IL-6; TGF-beta; anti-IFN-gamma and anti-IL-4.
GSM979714_Tfe3	GSM979714_Tfe3.bed	Embryonic Stem Cell	[PCL] O4GIP ES cells	Tfe3	mm10	GSE39815	GSM979714	N/A
GSM979715_Tfe3	GSM979715_Tfe3.bed	Embryonic Stem Cell	[PCL] O4GIP ES cells	Tfe3	mm10	GSE39815	GSM979715	ES cells transduced to express shRNA targeting Folliculin
GSM989013_Runx1	GSM989013_Runx1.bed	Haemogenic endothelium	[PCL] E14 (ES cell derived - Runx1-/-)	Runx1	mm10	GSE40235	GSM989013	iRunxHE uninduced (antibody used HA)
GSM989014_Runx1	GSM989014_Runx1.bed	Haemogenic endothelium	[PCL] Runx1 expressing E14 (ES cell derived - Runx1-/-); doxycycline treated	Runx1	mm10	GSE40235	GSM989014	iRunxHE (doxycycline overnight to induce expression of Runx1) (antibody used HA)
GSM989015_Fli1	GSM989015_Fli1.bed	Haemogenic endothelium	[PCL] E14 (ES cell derived - Runx1-/-)	Fli1	mm10	GSE40235	GSM989015	iRunxHE (uninduced)
GSM989016_Fli1	GSM989016_Fli1.bed	Haemogenic endothelium	[PCL] Runx1 expressing E14 (ES cell derived - Runx1-/-); doxycycline treated	Fli1	mm10	GSE40235	GSM989016	iRunxHE (doxycycline overnight to induce expression of Runx1)
GSM989017_Cebpb	GSM989017_Cebpb.bed	Haemogenic endothelium	[PCL] E14 (ES cell derived - Runx1-/-)	Cebpb	mm10	GSE40235	GSM989017	iRunxHE (uninduced)
GSM989018_Tal1	GSM989018_Tal1.bed	Haemogenic endothelium	[PCL] E14 (ES cell derived - Runx1-/-)	Tal1	mm10	GSE40235	GSM989018	iRunxHE (uninduced)
GSM989019_Tal1	GSM989019_Tal1.bed	Haemogenic endothelium	[PCL] Runx1 expressing E14 (ES cell derived - Runx1-/-); doxycycline treated	Tal1	mm10	GSE40235	GSM989019	iRunxHE (doxycycline overnight to induce expression of Runx1)
GSM989023_Fli1	GSM989023_Fli1.bed	Haemogenic endothelium	[PCL] E14 ES cell derived	Fli1	mm10	GSE40235	GSM989023	c?kit+/CD41+/Tie2? wild?type progenitor cells prepared on day 4 of blast differentiation
GSM989024_Tal1	GSM989024_Tal1.bed	Haemogenic endothelium	[PCL] E14 ES cell derived	Tal1	mm10	GSE40235	GSM989024  	c?kit+/CD41+/Tie2? wild?type progenitor cells prepared on day 4 of blast differentiation
GSM994508_ep300_th1	GSM994508_ep300_th1.bed	T-Cells	[PC] Th1 CD4+	Ep300	mm10	GSE40463	GSM994508-GSM994529	FACS sorted naive CD4+T cells from spleen and lymph node were cultured in vitro for 7 days under Th1 conditions (plate-bound anti-CD3 and anti-CD28; IL-12 and anti-IL-4 for 3 days; followed by IL-2 and IL-12 for 4 days) and restimulated with plate-bound CD3/28 + IL-12 for 2 hrs.
GSM994516_ep300_th2	GSM994516_ep300_th2.bed	T-Cells	[PC] Th2 CD4+	Ep300	mm10	GSE40463	GSM994516-GSM994533	FACS sorted naive CD4+T cells from spleen and lymph node were cultured in vitro for 7 days under Th2 condition and restimulated with plate-bound CD3/28 + IL-4 for 2 hrs
GSM994520_ep300_th1_controlV	GSM994520_ep300_th1_controlV.bed	T-Cells	[PC] Th1 CD4+	Ep300	mm10	GSE40463	GSM994520	FACS sorted naive CD4+T cells from spleen and lymph node were cultured in vitro for 7 days under Th1 conditions (plate-bound anti-CD3 and anti-CD28; IL-12 and anti-IL-4 for 3 days; followed by IL-2 and IL-12 for 4 days) and restimulated with plate-bound CD3/28 + IL-12 for 2 hrs.
GSM994524_ep300_th2_controlV	GSM994524_ep300_th2_controlV.bed	T-Cells	[PC] Th2 CD4+	Ep300	mm10	GSE40463	GSM994524	FACS sorted naive CD4+T cells from spleen and lymph node were cultured in vitro for 7 days under Th2 condition and restimulated with plate-bound CD3/28 + IL-4 for 2 hrs
GSM994528_STAT1	GSM994528_STAT1.bed	T-Cells	[PC] Th1 CD4+	Stat1	mm10	GSE40463	GSM994528	FACS sorted naive CD4+T cells from spleen and lymph node were cultured in vitro for 7 days under Th1 conditions (plate-bound anti-CD3 and anti-CD28; IL-12 and anti-IL-4 for 3 days; followed by IL-2 and IL-12 for 4 days) and restimulated with plate-bound CD3/28 + IL-12 for 2 hrs.
GSM998272_Tbx21	GSM998272_Tbx21.bed	T-Cells	[PC] Th1	Tbx21	mm10	GSE40623	GSM998272	Antibody: T-bet (Lab produced (Szabo et al.; Nature 2000)). Cell type: Th1. Cell number: 100000000. Genotype: wild type
GSM998924_Foxo1	GSM998924_Foxo1.bed	T-Cells	[PC] nTreg	Foxo1	mm10	GSE40656	GSM998924	CD4+CD25+ T cells from C57BL/6 mice
JunB_GSM1022318_UT_BMDM	JunB_GSM1022318_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage	Junb	mm10	GSE38377	GSM1022318	Untreated (day 7 of differentiation)
JunB_GSM1022319_LPS_4h_BMDM	JunB_GSM1022319_LPS_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; LPS treated	Junb	mm10	GSE38377	GSM1022319	LPS for 4 hrs (day 7 of differentiation)
JunD_GSM912915_MEL	JunD_GSM912915_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Jund	mm10	GSE36030	GSM912915	NULL
Ldb1_ERX002132_MEL	Ldb1_ERX002132_MEL.bed	Mouse ErythroLeukaemic 	[CL] C88 MEL	Ldb1	mm10	ERA000161	ERX002132	Ldb1 non-induced ChIP
Ldb1_ERX002134_MEL	Ldb1_ERX002134_MEL.bed	Mouse ErythroLeukaemic	[CL] C88 MEL	Ldb1	mm10	ERA000161	ERX002134	Ldb1 induced ChIP
MafK_GSM912899_MEL	MafK_GSM912899_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Mafk	mm10	GSE36030	GSM912899	NULL
Max_GSM912919_MEL	Max_GSM912919_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Max	mm10	GSE36030	GSM912919	NULL
Mtgr1_ERX002140_MEL	Mtgr1_ERX002140_MEL.bed	Mouse ErythroLeukaemic 	[CL] C88 MEL; DMSO treated	Cbfa2t2	mm10	ERA000161	ERX002140	Mtgr1 induced ChIP. Induced to differentiate with 2% DMSO for 4 d (Streptavidin beads)
Mtgr1_ERX002142_MEL	Mtgr1_ERX002142_MEL.bed	Mouse ErythroLeukaemic 	[CL] C88 MEL	Cbfa2t2	mm10	ERA000161	ERX002142	Mtgr1 non-induced ChIP (Streptavidin beads)
Mxi1_GSM912928_MEL	Mxi1_GSM912928_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Mxi1	mm10	GSE36030	GSM912928	NULL
NELFe_GSM912932_MEL	NELFe_GSM912932_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Rdbp	mm10	GSE36030	GSM912932	NULL
Oct2_GSM537990_B-Cells	Oct2_GSM537990_B-Cells.bed	B-Cells	[PC] B-Cells	Pou2f2	mm10	GSE21512	GSM537990	Splenic B cells were isolated from 6- to 8-week-old C57Bl/6 mice by magnetic depletion of CD43- and CD11b-expressing cells.
p300_GSM912893_MEL	p300_GSM912893_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Ep300	mm10	GSE36030	GSM912893	NULL
p300_GSM912921_MEL	p300_GSM912921_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Ep300	mm10	GSE36030	GSM912921	NULL
PPARg_GSM686979_day2_Adipocytes	PPARg_GSM686979_day2_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Pparg	mm10	GSE27826	GSM686979	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 2 days.
PPARg_GSM686980_day6_Adipocytes	PPARg_GSM686980_day6_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Pparg	mm10	GSE27826	GSM686980	Cells were differentiated in DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methyxanthine for 2 days. They were then transferred to DMEM containing FBS and insulin for a further 2 days. Cells were then maintained in DMEM with FBS. 
PU.1_GSM1022260_stat6ko_ctrl_UT_BMDM	PU.1_GSM1022260_stat6ko_ctrl_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat6 KO)	Spi1	mm10	GSE38377	GSM1022260	Untreated (day 7 of differentiation)
PU.1_GSM1022261_stat6ko_ctrl_IL4_4h_BMDM	PU.1_GSM1022261_stat6ko_ctrl_IL4_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat6 KO); IL-4 treated	Spi1	mm10	GSE38377	GSM1022261	Control IL-4 4 h (day 7 of differentiation)
PU.1_GSM1022262_stat6ko_UT_BMDM	PU.1_GSM1022262_stat6ko_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat6 KO)	Spi1	mm10	GSE38377	GSM1022262	Stat6 KO untreated (day 7 of differentiation)
PU.1_GSM1022263_stat6ko_IL4_4h_BMDM	PU.1_GSM1022263_stat6ko_IL4_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat6 KO); IL-4 treated	Spi1	mm10	GSE38377	GSM1022263	Stat6 KO IL-4 4 h (day 7 of differentiation)
PU.1_GSM1022280_stat1ko_ctrl_UT_BMDM	PU.1_GSM1022280_stat1ko_ctrl_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat1 KO)	Spi1	mm10	GSE38377	GSM1022280	Stat1 KO untreated (day 7 of differentiation)
PU.1_GSM1022281_stat1ko_ctrl_IFNg_4h_BMDM	PU.1_GSM1022281_stat1ko_ctrl_IFNg_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat1 KO); IFNg treated	Spi1	mm10	GSE38377	GSM1022281	Stat1 KO IFNg for 4 hrs (day 7 of differentiation)
PU.1_GSM1022282_stat1ko_UT_BMDM	PU.1_GSM1022282_stat1ko_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat1 KO)	Spi1	mm10	GSE38377	GSM1022282	Stat1 KO untreated (day 7 of differentiation)
PU.1_GSM1022283_stat1ko_IFNg_4h_BMDM	PU.1_GSM1022283_stat1ko_IFNg_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage (Stat1 KO); IFNg treated	Spi1	mm10	GSE38377	GSM1022283	Stat1 KO IFNg for 4 hrs (day 7 of differentiation)
PU.1_GSM1022310_tc_IFNg_UT_BMDM	PU.1_GSM1022310_tc_IFNg_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage	Spi1	mm10	GSE38377	GSM1022310	Untreated (day 7 of differentiation)
PU.1_GSM1022311_tc_IFNg_30min_BMDM	PU.1_GSM1022311_tc_IFNg_30min_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Spi1	mm10	GSE38377	GSM1022311	IFNg for 30min (day 7 of differentiation)
PU.1_GSM1022312_tc_IFNg_1h_BMDM	PU.1_GSM1022312_tc_IFNg_1h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Spi1	mm10	GSE38377	GSM1022312	IFNg for 1h (day 7 of differentiation)
PU.1_GSM1022313_tc_IFNg_2h_BMDM	PU.1_GSM1022313_tc_IFNg_2h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Spi1	mm10	GSE38377	GSM1022313	IFNg for 2h (day 7 of differentiation)
PU.1_GSM940924_25_UT_BMDM	PU.1_GSM940924_25_UT_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage	Spi1	mm10	GSE38377	GSM940924-GSM940925	Untreated (day 7 of differentiation)
PU.1_GSM940926_LPS_4h_BMDM	PU.1_GSM940926_LPS_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; LPS treated	Spi1	mm10	GSE38377	GSM940926	LPS for 4h (day 7 of differentiation)
PU.1_GSM940927_LPS_24h_BMDM	PU.1_GSM940927_LPS_24h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; LPS treated	Spi1	mm10	GSE38377	GSM940927	LPS for 24h (day 7 of differentiation)
PU.1_GSM940928_IFNg_4h_BMDM	PU.1_GSM940928_IFNg_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Spi1	mm10	GSE38377	GSM940928	IFNg for 4h (day 7 of differentiation)
PU.1_GSM940929__IL4_4h_BMDM	PU.1_GSM940929__IL4_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Spi1	mm10	GSE38377	GSM940929	IL-4 for 4h (day 7 of differentiation)
PU.1_GSM940930_TNFa_4h_BMDM	PU.1_GSM940930_TNFa_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; TNFa treated	Spi1	mm10	GSE38377	GSM940930	TNFa for 4h (day 7 of differentiation)
PU.1_GSM940931_TGFb1_4h_BMDM	PU.1_GSM940931_TGFb1_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; TGFb1 treated	Spi1	mm10	GSE38377	GSM940931	TGFb1 for 4h (day 7 of differentiation)
PU.1_GSM940932_IL1b_4h_BMDM	PU.1_GSM940932_IL1b_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-1b treated	Spi1	mm10	GSE38377	GSM940932	IL-1b for 4h (day 7 of differentiation)
PU.1_GSM940933_MALP2_BMDM	PU.1_GSM940933_MALP2_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; MALP2 treated	Spi1	mm10	GSE38377	GSM940933	MALP2 for 4h (day 7 of differentiation)
PU.1_GSM940934_CpG_BMDM	PU.1_GSM940934_CpG_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; CpG treated	Spi1	mm10	GSE38377	GSM940934	CpG for 4hrs (day 7 of differentiation)
PU1_GSM537983_Macrophages	PU1_GSM537983_Macrophages.bed	Macrophages	[PC] Peritoneal Macrophage	Spi1	mm10	GSE21512	GSM537983	Thioglycollate-elicited peritoneal macrophages
PU1_GSM537989_B-Cells	PU1_GSM537989_B-Cells.bed	B-Cells	[PC] B-Cells	Spi1	mm10	GSE21512	GSM537989	Splenic B cells were isolated from 6- to 8-week-old C57Bl/6 mice by magnetic depletion of CD43- and CD11b-expressing cells.
Rad21_GSM912933_DMSO_MEL	Rad21_GSM912933_DMSO_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL; DMSO treated	Rad21	mm10	GSE36030	GSM912933	5 d with 2% DMSO
Rad21_GSM912935_MEL	Rad21_GSM912935_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Rad21	mm10	GSE36030	GSM912935	NULL
RXR_GSM686978_4h_Adipocytes	RXR_GSM686978_4h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Rxra	mm10	GSE27826	GSM686978	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 4 hrs.
Scl_ERX002136_MEL	Scl_ERX002136_MEL.bed	Mouse ErythroLeukaemic 	[CL] C88 MEL	Tal1	mm10	ERA000161	ERX002136	Tal1 non-induced ChIP
Scl_ERX002138_MEL	Scl_ERX002138_MEL.bed	Mouse ErythroLeukaemic 	[CL] C88 MEL; DMSO treated	Tal1	mm10	ERA000161	ERX002138	Tal1 induced ChIP. Induced to differentiate with 2% DMSO for 4 d
SMC3_GSM912923_MEL	SMC3_GSM912923_MEL.bed	Mouse ErythroLeukaemic	[CL] MEL	Smc3	mm10	GSE36030	GSM912923	NULL
Stat1_GSM1022315_tc_IFNg_30min_BMDM	Stat1_GSM1022315_tc_IFNg_30min_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Stat1	mm10	GSE38377	GSM1022315	IFNg for 30min (day 7 of differentiation)
Stat1_GSM1022316_tc_IFNg_1h_BMDM	Stat1_GSM1022316_tc_IFNg_1h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Stat1	mm10	GSE38377	GSM1022316	IFNg for 1h (day 7 of differentiation)
Stat1_GSM1022317_tc_IFNg_2h_BMDM	Stat1_GSM1022317_tc_IFNg_2h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IFNg treated	Stat1	mm10	GSE38377	GSM1022317	IFNg for 2h (day 7 of differentiation)
Stat5a_GSM686977_4h_Adipocytes	Stat5a_GSM686977_4h_Adipocytes.bed	Adipocytes	[CL] 3T3-L1 preadipocyte	Stat5a	mm10	GSE27826	GSM686977	Cells were induced with DMEM containing FBS; dexamethasone; insulin and 3-isobutyl-1-methylxanthine for 4 hrs.
Stat6_GSM1022301_tc_IL4_15min_BMDM	Stat6_GSM1022301_tc_IL4_15min_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Stat6	mm10	GSE38377	GSM1022301	IL-4 15 min (day 7 of differentiation)
Stat6_GSM1022302_tc_IL4_30min_BMDM	Stat6_GSM1022302_tc_IL4_30min_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Stat6	mm10	GSE38377	GSM1022302	IL-4 30 min (day 7 of differentiation)
Stat6_GSM1022303_tc_IL4_1h_BMDM	Stat6_GSM1022303_tc_IL4_1h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Stat6	mm10	GSE38377	GSM1022303	IL-4 1h (day 7 of differentiation)
Stat6_GSM1022304_tc_IL4_2h_BMDM	Stat6_GSM1022304_tc_IL4_2h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Stat6	mm10	GSE38377	GSM1022304	IL-4 2h (day 7 of differentiation)
Stat6_GSM1022305_tc_IL4_4h_BMDM	Stat6_GSM1022305_tc_IL4_4h_BMDM.bed	Macrophages	[PC] Bone Marrow Macrophage; IL-4 treated	Stat6	mm10	GSE38377	GSM1022305	IL-4 4h (day 7 of differentiation)